1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTCCGCCGTCGCGGCGCGCCACGGCGCCGCGGACCTCTGCCTCCGCGAGGTCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAGgtcagttcccttcatcccccgccttccgttccgtctccgcgctttgcccttttaatcccccgtggcttgccgcatctcgatccgtgttgcggcggcggat...
species | Zea mays |
transcript | GRMZM2G123709_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAG GACCTTGTAATGCGGCTCCAGATTCACCGGAAGCTTGACAGGCACACGGGEST: gi|211523958|gb|FL270275.1|FL270275
genomic: TCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAGgtcagttccc ... cttctttcagGACCTTGTAATGCGGCTCCAGATTCACCGGAAGCTTGACAGGCACACGGG
EST: TCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAG GACCTTGTAATGCGGCTCCAGATTCACCGGAAGCTTGACAGGCACACGGGCEST: gi|211520963|gb|FL270268.1|FL270268
genomic: TCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAGgtcagttccc ... cttctttcagGACCTTGTAATGCGGCTCCAGATTCACCGGAAGCTTGACAGGCACACGGGC
EST: TCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAG GACCTTGTAATGCGGCTCCAGATTCACCGGAAGCTTGACAGGCACACGGGCEST: gi|211523959|gb|FL270276.1|FL270276
genomic: TCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAGgtcagttccc ... cttctttcagGACCTTGTAATGCGGCTCCAGATTCACCGGAAGCTTGACAGGCACACGGGC
EST: TCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAG GACCTTGTAATGCGGCTCCAGATTCACCGGAAGCTTGACAGGCACACGGGCEST: gi|211520964|gb|FL270269.1|FL270269
genomic: TCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAGgtcagttccc ... cttctttcagGACCTTGTAATGCGGCTCCAGATTCACCGGAAGCTTGACAGGCACACGGGC
EST: TCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAG GACCTTGTAATGCGGCTCCAGATTCACCGGAAGCTTGACAGGCACACGGGCEST: gi|211523956|gb|FL270273.1|FL270273
genomic: TCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAGgtcagttccc ... cttctttcagGACCTTGTAATGCGGCTCCAGATTCACCGGAAGCTTGACAGGCACACGGGC
EST: TCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAG GACCTTGTAATGCGGCTCCAGATTCACCGGAAGCTTGACAGGCACACGGGCEST: gi|211523955|gb|FL270272.1|FL270272
genomic: TCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAGgtcagttccc ... cttctttcagGACCTTGTAATGCGGCTCCAGATTCACCGGAAGCTTGACAGGCACACGGGC
EST: TCGGGGACCTCCTGCCTCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAG GACCTTGTAATGCGGCTCCAGATTCACCGGAAGCTTGACAGGCACACGGGCEST: gi|28909535|gb|CB330979.1|CB330979
genomic: TCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAGgtcagttccc ... cttctttcagGACCTTGTAATGCGGCTCCAGATTCACCGGAAGCTTGACAGGCACACGGGC
EST: TCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAG GACCTTGTAATGCGGCTCCAGATTCACCGGAAGCTTGACAGGCACACGGGCEST: gi|211523957|gb|FL270274.1|FL270274
genomic: TCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAGgtcagttccc ... cttctttcagGACCTTGTAATGCGGCTCCAGATTCACCGGAAGCTTGACAGGCACACGGGC
EST: TCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAG GACCTTGTAATGCGGCTCCAGATTCACCGGAAGCTTGACAGGCACACGGGC
genomic: TCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAGgtcagttccc ... cttctttcagGACCTTGTAATGCGGCTCCAGATTCACCGGAAGCTTGACAGGCACACGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCGCCGTCGCGGCGCGCCACGGCGCCGCGGACCTCTGCCTCCGCGAGGTCGGGGACCTCCTGCCGCGACGCTTCGCCCGCCGCGCGGCCGGTTCCGAGgtcagttcccttcatcccccgccttccgttccgtctccgcgctttgcccttttaatcccccgtggcttgccgcatctcgatccgtgttgcggcggcggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccgt