Sequence
atgc intronic sequence ATGC exonic sequenceGTGATGTACTATCTCCTCCGCAAGTGCGGCGGCCTGCCGCTCGCCGCGCCGGTCATCGCCGAGGTGGATCTCTACAAGTTCGACCCATGGCAGCTCCCAGgtacgtcgaacaatcggatcatcgtcagcgagtgttagttatccgagctagctaggtgacgaccccgcgctgacctcatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G123667_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g08210.1 (Oryza sativa), 5'ss of exon 1
GTGATGTACTATCTCCTCCGCAAGTGCGGCGGCCTGCCGCTCGCCGCGCCGGTCATCGCCGAGGTGGATCTCTACAAGTTCGACCCATGGCAGCTCCCAGgtacgtc-gaacaa-------tcggatcatcgtcagcgagtgttagtt--atccgagct-agctaggtgacgaccccgcgctgacctcatcag
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GTGATGTACTACCTGTGCCGCAAGTGCGGCGGCCTCCCCCTCGCCGCCCCGGTGATCGCCGAGGTGGACCTCTACAAGTTCAACCCATGGGATCTCCCCGgtaagcaagagcaaaagcagatcgaatcgaatcgaggaaattgaagtcgaattcaaattcaattaattggggatttggaattgttgcag----
upper sequence: GRMZM2G123667_T04 (Zea mays), 5'ss of exon 1
lower sequence: Vv07s0031g02610.t01 (Vitis vinifera), 5'ss of exon 1
GTGATGTACTATCTCCTCCGCAAGTGCGGCGGCCTGCCGCTCGCCGCGCCGGTCATCGCCGAGGTGGATCTCTACAAGTTCGACCCATGGCAGCTCCCAGgtacgtcgaacaatcggat--------catcgtcagc-----gagtgttagttatccgagctagctaggtgacgaccccgcgctgacctcatcag-----
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GTGGTGCATTATCTGGTTCGTAAATGCGCATCACAGAGCATCTCCGTTCCGATTATTGCCGAGGTTGATCTCTACAAGTACGATCCATGGCAGCTTCCAGgtattttttttattctcttttctctttctttttcagatttggaaaccttaagtgtgagaaatcctgatttgatgattcgaattcgattctctgaaatgggMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76284443|gb|DV024011.1|DV024011EST: GGTCATCGCCGAGGTGGATCTCTACAAGTTCGACCCATGGCAGCTCCCAG CTGGCATGGTGATCGGTGGTTGCAGAGAAGGCGTTCGGTGGGGAGAAGGAG
genomic: GGTCATCGCCGAGGTGGATCTCTACAAGTTCGACCCATGGCAGCTCCCAGgtacgtcgaa ... acctcatcagCTGGCATGGTGATCGGTGGTTGCAGAGAAGGCGTTCGGTGGGGAGAAGGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGATGTACTATCTCCTCCGCAAGTGCGGCGGCCTGCCGCTCGCCGCGCCGGTCATCGCCGAGGTGGATCTCTACAAGTTCGACCCATGGCAGCTCCCAGgtacgtcgaacaatcggatcatcgtcagcgagtgttagttatccgagctagctaggtgacgaccccgcgctgacctcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC