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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCGGCTACACGCTCTCGGAGTCTCGGACGCCGCCCAAATGGAGGCCATCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacactacacgcctccccctttcgcaagatctccgccatccgttcctccgcgacccggccacgggctcgcaccgcccggctcccgccctttctcttaacgcgggtccttcgagatctggtcatcatctctaggtttgttattgatcactgatgccgcgtccgtgctcgcggccgcccgtgtcctgtttcgcag

Basic information

species Zea mays
transcript GRMZM2G123624_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G123624_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g36870.1 (Oryza sativa), 5'ss of exon 1
CCACCGGCTACACGCTCTCGGAGTCTCGGACGCCGCC-CAAATGGAGGCCATCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaac------actacacgcctccccctttcgcaagatctccgccatcc-gttcctccgcgac-----ccggccacgggctcgcaccgcccggctcccgccctttctcttaacgcgggtccttcgagatctggtcatcatctctaggtttgttattgatcactgatgccgcgtccgtgctcgcggccgcccgtgtcctgtttcgcag
   | | ||   ||         || | | | | | | |  ||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||| |       | | |  ||   ||| | | |  |   ||| | ||||     | ||| | |     |||| |  |  ||||  | |||  |||| ||| |  ||||  |  || |   | ||| ||  |   ||||                                                                     
-GGCAGTCTCGGCGGCGATTCGATCGCCGCCACGGTCGCCGATGGAGGCCATCCGGAAGCAGGCGTCCAAGCTCCGGGAGCAGGTCGCCCGGCAGCAGCAGgtgagcccagattcgagattccctacccctcctcgtggattcctcgatcccagctcgccgtgtctccctccggtcgagatctcgtgctgcc--gctcgcgcgcgctctcccatggctgacacctcgggagtttcgcatcgcag-----------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211365062|gb|FL344713.1|FL344713
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211210947|gb|FL341928.1|FL341928
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGASGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|19822322|gb|BQ048346.1|BQ048346
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211460542|gb|FL352486.1|FL352486
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211492538|gb|FL352068.1|FL352068
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|76935690|gb|DV174431.1|DV174431
EST:     CCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: CCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|149085095|gb|EE174602.2|EE174602
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|88753110|gb|DY537251.1|DY537251
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|71765024|gb|DR962961.1|DR962961
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211152488|gb|FL335975.1|FL335975
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211050403|gb|FL363821.1|FL363821
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211178619|gb|FL327172.1|FL327172
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GC-GTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGAC-GCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|71768414|gb|DR966351.1|DR966351
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211163871|gb|FL345465.1|FL345465
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211265433|gb|FL346828.1|FL346828
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|71434707|gb|DR815757.1|DR815757
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211177242|gb|FL341479.1|FL341479
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTAYGGCGCAGANGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211244356|gb|FL352760.1|FL352760
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|61119021|gb|DN559982.1|DN559982
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211543242|gb|FL317104.1|FL317104
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211520282|gb|FL356688.1|FL356688
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211181873|gb|FL366111.1|FL366111
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211023761|gb|FL452145.1|FL452145
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211293997|gb|FL361747.1|FL361747
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|71328410|gb|DR800842.1|DR800842
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211389151|gb|FL356154.1|FL356154
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211430360|gb|FL347862.1|FL347862
EST:     TCCGGAAGCAGGCCTCAWAGCTCCGGGAGCAGGTAGCTCGGYAGCAGCAG                         GCGGNTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGASSGCGTGTTCGC
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGG-TGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGC
EST: gi|74244904|gb|DT652818.1|DT652818
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211494820|gb|FL326686.1|FL326686
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211293996|gb|FL361746.1|FL361746
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|74239024|gb|DT646938.1|DT646938
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211470983|gb|FL363735.1|FL363735
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211314173|gb|FL331842.1|FL331842
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211529255|gb|FL011602.1|FL011602
EST:     AGCTCGGCAGCAGCAG                         GCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
genomic: AGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCT
EST: gi|211250291|gb|FL313176.1|FL313176
EST:     TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAG                         GCGGNTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGASSGCGTGTTCGC
genomic: TCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGG-TGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 158

CCACCGGCTACACGCTCTCGGAGTCTCGGACGCCGCCCAAATGGAGGCCATCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCTGACGAGGCTGAGGCGCAACAGCACTCCAAGCTCGAGAAACTCTACATCT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 76

CCACCGGCTACACGCTCTCGGAGTCTCGGACGCCGCCCAAATGGAGGCCATCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCTGACGAGGCTGAGGCGCAACAGCACTCCAAGCTCGAGAAACTCTACATCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 42

CCACCGGCTACACGCTCTCGGAGTCTCGGACGCCGCCCAAATGGAGGCCATCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCTGACGAGGCTGAGGCGCAACAGCACTCCAAGCTCGAGAAACTCTACATCT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 68

CCACCGGCTACACGCTCTCGGAGTCTCGGACGCCGCCCAAATGGAGGCCATCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacacta ... tgtttcgcagGCGGTGATGAAGCAGTTCGGGGGCGGGTACGGCGCAGACGGCGTGTTCGCTGACGAGGCTGAGGCGCAACAGCACTCCAAGCTCGAGAAACTCTACATCT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCACCGGCTACACGCTCTCGGAGTCTCGGACGCCGCCCAAATGGAGGCCATCCGGAAGCAGGCCTCAAAGCTCCGGGAGCAGGTAGCTCGGCAGCAGCAGgtgaacactacacgcctccccctttcgcaagatctccgccatccgttcctccgcgacccggccacgggctcgcaccgcccggctcccgccctttctcttaacgcgggtccttcgagatctggtcatcatctctaggtttgttattgatcactgatgccgcgtccgtgctcgcggccgcccgtgtcctgtttcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG