Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTCTACTAAACAAACAAGCAAAGCAAGGCCGACGAATCGAGGGAGAGGGAGGAAGCAGGCCAGCACGGGGTACGCCGAGGCACAGAACAACCGACAGGgtatttactccccccgcccttgtctcgcccccatttctcgccctttcacttccatcgctcccctcctcctctccgattctctccgcttcctccaaacttt...

Basic information

species Zea mays
transcript GRMZM2G123140_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G123140_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g42490.1 (Oryza sativa), 5'ss of exon 1
TACTCTAC--TAAACAAACAAGCAAAGCAAGGCCGACGAATCGAGGGAGAGGGAGGA-AGCAGGCCAGCACGGGGTACGCCGAGGCACAGAACAACCGACAGGgtatttactccccccgcccttgtctcgcccccatttctcgccctttcacttccatcgctcccctcctcctctccg-attctctccgcttcctccaaacttt--
 |  |  |  | |   | |       | ||||| |  | |  ||   ||| | |||| |  | |  | || ||     |    | ||| |||||||||||||||||||||||||    ||| ||  |||  |     | ||  | |   ||| ||      ||||  |  |  | ||| | ||  ||  | |||||||| || |  
CAGCCAGCCGTGATTGATCTCAAGGGGGAAGGCAGCTGCAGGGATCAAGAAGAAGGAGAAGAAGTGATCAAGGAA---GGAAGGCCACGGAACAACCGACAGGgtatttactccg---gccatttactccgcttgtctcctttcaccaccacctctcctcttccctcctgctccgccgtagtccatctccatcctccaatctcttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71773681|gb|DR971578.1|DR971578
EST:     GAGGAAGCAGGCCAGCACGGGGTACGCCGAGGCACAGAACAACCGACAGG                         TCATCAGGCGAGCCAGCCAGGGACGGGAGTAAGAGAGAAGGGGTTCTTCCA
genomic: GAGGAAGCAGGCCAGCACGGGGTACGCCGAGGCACAGAACAACCGACAGGgtatttactc ... aggaacacagTCATCAGGCGAGCCAGCCAGGGACGGGAGTAAGAGAGAAGGGGTTCTTCCA