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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGAGGACGTAGCCGATGACAAGGCCGTCATCCCCGCGACCGACCCGCCGCCGCCGCCGCCGCCGGCCGACGACTCCAAGGCCCTGGCCATCGTCGAGAgtgagtacagcctgctctctgctctgctttattaattaattctgcccccctctatgtagtccaaggcttgcgatggaaacatggcgctggcggactggtg...

Basic information

species Zea mays
transcript GRMZM2G122937_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G122937_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g45070.1 (Oryza sativa), 5'ss of exon 1
AAGGAGGACGTAGCCGATGACAAGGCCGTCATCCCCGCGACCGACCCGCCGCC------GCCGCCGCCGCCGGCCGACGACTCCAAGGCCCTGGCCATCGTCGAGAgtgagtacagcctgctctctgctctgctttattaattaattctgcccccctctatgtagtccaaggc---ttgcgatggaaacatggcgctggcggactggtg
      ||||| ||||| || |||||||||||||||||  |||  |||||| |      |  |  ||| || | ||||||||||||||| ||||||||||||||||||||||      ||||| ||||| |   ||     || ||| ||| |   | |   | ||| | |||   |||     |  |      | ||| |  |  || 
------GACGTCGCCGAGGAGAAGGCCGTCATCCCCGCCCCCGCGCCGCCGGCCGAGGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtg-gctttgctcgctgctataaatttccgtttgatt-tgctcttgtttggatggtcaagggctgcttgtttgtgtgatggaaaggtggtgagcatgt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18167362|gb|BM337201.1|BM337201
EST:     CGCCGCCGCCGCCGGCCGACGACTCCAAGGCCCTGGCCATCGTCGAGA                         AAGTTGCAGATGAACCTGCTCCCGAGAAGCCTGCCCCTGCGAAGCAAGGGG
genomic: CGCCGCCGCCGCCGGCCGACGACTCCAAGGCCCTGGCCATCGTCGAGAgtgagtacag ... gtctttccagAAGTTGCAGATGAACCTGCTCCCGAGAAGCCTGCCCCTGCGAAGCAAGGGG