Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACCCCTCTCTTCTTCCCGCGGTCTGCTCGTTCGATCTGTGCAGCAGATCTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttccttctccttcctgtcttttttgtttatcgctctttcagaagttctgtgttgctcatcgtttgtctgtcggactgtctgtgaggaagttttgg...

Basic information

species Zea mays
transcript GRMZM2G122871_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32911393|gb|CF016205.1|CF016205
EST:     CTGAGGTCTCGAGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211066069|gb|FK950657.1|FK950657
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|20301023|gb|BQ163966.1|BQ163966
EST:     CTGAGGTCCCGAGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211066063|gb|FK950651.1|FK950651
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211439479|gb|FK950632.1|FK950632
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211426487|gb|FK950553.1|FK950553
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211429076|gb|FK950568.1|FK950568
EST:     TGAGGTCCCGGGCGYACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: TGAGGTCCCGGGCG-ACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211426488|gb|FK950554.1|FK950554
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211197063|gb|FK950520.1|FK950520
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211436884|gb|FK950619.1|FK950619
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211436885|gb|FK950620.1|FK950620
EST:     TGAGGT--CGGGCGA-CGTTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: TGAGGTCCCGGGCGACCG-TGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211421274|gb|FK950527.1|FK950527
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211436889|gb|FK950624.1|FK950624
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211434295|gb|FK950612.1|FK950612
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|32844294|gb|CD983975.1|CD983975
EST:     CGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211429087|gb|FK950579.1|FK950579
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211436886|gb|FK950621.1|FK950621
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211431686|gb|FK950589.1|FK950589
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211068803|gb|FK950661.1|FK950661
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211431688|gb|FK950591.1|FK950591
EST:     CTGAGGTCTCGAGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211068812|gb|FK950670.1|FK950670
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211423884|gb|FK950551.1|FK950551
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211421271|gb|FK950524.1|FK950524
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211439488|gb|FK950641.1|FK950641
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211436883|gb|FK950618.1|FK950618
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211421282|gb|FK950535.1|FK950535
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211431689|gb|FK950592.1|FK950592
EST:     CTGAGGTCTCGAGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211068811|gb|FK950669.1|FK950669
EST:     CTGAGGTCCCGGGCCACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTAWWGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211071543|gb|FK950680.1|FK950680
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211429089|gb|FK950581.1|FK950581
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|4628217|gb|AI619091.1|AI619091
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211434287|gb|FK950604.1|FK950604
EST:     GGTTCCCGGGGCGGAACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: GG-TCCC-GGGC-G-ACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|32823866|gb|CD963588.1|CD963588
EST:     CTGAGGTCTCGAGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211421280|gb|FK950533.1|FK950533
EST:     TTGAGGTCCCGGGCGA-CGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: -TGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211068800|gb|FK950658.1|FK950658
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211421284|gb|FK950537.1|FK950537
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211068808|gb|FK950666.1|FK950666
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211066059|gb|FK950647.1|FK950647
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211071538|gb|FK950675.1|FK950675
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211066058|gb|FK950646.1|FK950646
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTTATTGC
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTT-ATTGC
EST: gi|211197057|gb|FK950514.1|FK950514
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGTGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211066066|gb|FK950654.1|FK950654
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211434290|gb|FK950607.1|FK950607
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGNGGGGCTGGAAACAANAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211071546|gb|FK950683.1|FK950683
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211197058|gb|FK950515.1|FK950515
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211421281|gb|FK950534.1|FK950534
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTRCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211068806|gb|FK950664.1|FK950664
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|32914735|gb|CF019547.1|CF019547
EST:     CTGAGGTCTCGAGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211421273|gb|FK950526.1|FK950526
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211436879|gb|FK950614.1|FK950614
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211071541|gb|FK950678.1|FK950678
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211431682|gb|FK950585.1|FK950585
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211429085|gb|FK950577.1|FK950577
EST:     TTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: -TGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211426492|gb|FK950558.1|FK950558
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211066056|gb|FK950644.1|FK950644
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211429086|gb|FK950578.1|FK950578
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211434282|gb|FK950599.1|FK950599
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211421279|gb|FK950532.1|FK950532
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|6020997|gb|AW065925.1|AW065925
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211429084|gb|FK950576.1|FK950576
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211431692|gb|FK950595.1|FK950595
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211434286|gb|FK950603.1|FK950603
EST:     TGAGGTCCCGGGGCGA-CGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: TGAGGTCCC-GGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211068813|gb|FK950671.1|FK950671
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211434288|gb|FK950605.1|FK950605
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211429082|gb|FK950574.1|FK950574
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211439487|gb|FK950640.1|FK950640
EST:     CTGAGGTCCCGGGCGA-CGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211068814|gb|FK950672.1|FK950672
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211068807|gb|FK950665.1|FK950665
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211421283|gb|FK950536.1|FK950536
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211431683|gb|FK950586.1|FK950586
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211066068|gb|FK950656.1|FK950656
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
EST: gi|211429077|gb|FK950569.1|FK950569
EST:     CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTC                         GTATTGCATARTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT
genomic: CTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1703

AAACCCCTCTCTTCTTCCCGCGGTCTGCTCGTTCGATCTGTGCAGCAGATCTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCTGCAGAATACAGTGGGATCAAGGTTGAGTTGACCAAGGATTTTGAGATGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 995

AAACCCCTCTCTTCTTCCCGCGGTCTGCTCGTTCGATCTGTGCAGCAGATCTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCTGCAGAATACAGTGGGATCAAGGTTGAGTTGACCAAGGATTTTGAGATGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 958

AAACCCCTCTCTTCTTCCCGCGGTCTGCTCGTTCGATCTGTGCAGCAGATCTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCTGCAGAATACAGTGGGATCAAGGTTGAGTTGACCAAGGATTTTGAGATGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 986

AAACCCCTCTCTTCTTCCCGCGGTCTGCTCGTTCGATCTGTGCAGCAGATCTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttcct ... tgttgcatagGTATTGCATAGTGGGGCTGGAAACAAGAATGCCTTCAAAGCACTTATTGCTGCAGAATACAGTGGGATCAAGGTTGAGTTGACCAAGGATTTTGAGATGG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACCCCTCTCTTCTTCCCGCGGTCTGCTCGTTCGATCTGTGCAGCAGATCTGAGGTCCCGGGCGACCGTGAAGCAGCTTCAATCGTCGGCATGGCGCTCgtgagttccttctccttcctgtcttttttgtttatcgctctttcagaagttctgtgttgctcatcgtttgtctgtcggactgtctgtgaggaagttttgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttcc