1 5' 3' | 2 5' 3' | 3 5' 3' |
GCACCTCGATGCCCCCTTATTCGGCGCCGATCTCATCCCCTCCGGCCGCCTCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAGgtacggcataccattgcattgcattgcaaagagacagacggttgctcttcgccatctcgcttgcttacacacatcaaccgcatcgatccatggcctgcgg...
species | Zea mays |
transcript | GRMZM2G122223_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GACTCGAGGAAGAG ATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGACEST: gi|91048468|gb|EB158886.1|EB158886
genomic: GACTCGAGGAAGAGgtacggcata ... gtatttgcagATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGAC
EST: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAG ATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGACEST: gi|211136816|gb|FL064025.1|FL064025
genomic: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAGgtacggcata ... gtatttgcagATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGAC
EST: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAG ATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGACEST: gi|211136815|gb|FL064024.1|FL064024
genomic: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAGgtacggcata ... gtatttgcagATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGAC
EST: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAG ATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGACEST: gi|211136814|gb|FL064023.1|FL064023
genomic: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAGgtacggcata ... gtatttgcagATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGAC
EST: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAG ATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGACEST: gi|9733598|gb|BE512350.1|BE512350
genomic: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAGgtacggcata ... gtatttgcagATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGAC
EST: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAG ATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGACEST: gi|76933767|gb|DV173581.1|DV173581
genomic: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAGgtacggcata ... gtatttgcagATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGAC
EST: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAG ATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGACEST: gi|211136817|gb|FL064026.1|FL064026
genomic: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAGgtacggcata ... gtatttgcagATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGAC
EST: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAG ATATGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGACEST: gi|9731032|gb|BE509784.1|BE509784
genomic: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAGgtacggcata ... gtatttgcagATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGAC
EST: CCGGAGGACTCGAGGAAGAG ATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGACEST: gi|40334279|gb|CK368349.1|CK368349
genomic: CCGGAGGACTCGAGGAAGAGgtacggcata ... gtatttgcagATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGAC
EST: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAG ATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGACEST: gi|37377713|gb|CF625486.1|CF625486
genomic: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAGgtacggcata ... gtatttgcagATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGAC
EST: CCCCCGGAGGACTCGAGGAAGAG ATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGACEST: gi|76933772|gb|DV173582.1|DV173582
genomic: CCCCCGGAGGACTCGAGGAAGAGgtacggcata ... gtatttgcagATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGAC
EST: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAG ATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGACEST: gi|211135879|gb|FL064022.1|FL064022
genomic: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAGgtacggcata ... gtatttgcagATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGAC
EST: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAG ATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGAC
genomic: TCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAGgtacggcata ... gtatttgcagATAAGGATGTTTCAGACAAGAGTGTTACTGGGAGGAATGAACATGTATGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACCTCGATGCCCCCTTATTCGGCGCCGATCTCATCCCCTCCGGCCGCCTCCGCCGGATGCGCGGGTGGCGCCACTCCCCCGGAGGACTCGAGGAAGAGgtacggcataccattgcattgcattgcaaagagacagacggttgctcttcgccatctcgcttgcttacacacatcaaccgcatcgatccatggcctgcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA