Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGACCCCGGCGGCGTTCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtccccgcctctcaactctccctctttctcggccccttttcccccgcggcccgtttgagtcgggcccgccgtggcgtgtggatggggagcata...

Basic information

species Zea mays
transcript GRMZM2G121820_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G121820_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g59440.2 (Oryza sativa), 5'ss of exon 1
GGGACCCCGGCGGCGTTCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtccccgcctctcaactctccctctttctcggccccttttcccccgcggcccgtttgagtcgggcccgccgtggcgtgtggatggggagcata--
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   || | ||   |  | ||| | ||  | | || |  |      ||||    | | |||| |||  |     || || |||  |    | ||   
GGGACCCCGGCGGGGTGCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACGCGCCTgtgagcgaccctctccctccctccctctc-ctcgcgctgcgctgtactgtacgcg-taggctcgagttgggtacttttgggtgtttgggggaactggatcgc

upper sequence: GRMZM2G121820_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA02G44250.2 (Glycine max), 5'ss of exon 1
GGGACCCCGGCGGCGTTCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtccccgcctctcaa-ctctccctctttctcggccccttttcccccgcggcccgtttgagtcgggcccgccgtggcgtgtggatggggagcata
 |||||| | |  ||| || ||||||||||| ||||| ||||| |  ||||| || |||||||||||||||||| |||  |||||||| ||||| ||  |||  ||   | |   |||||   ||||| |||| | | |  || || |     || ||     | | |    |   | ||  | | |   |       |  
CGGACCCTGACAACGTCCTCCAGAGCTGGGATCCCACTCTCGTTAGTCCCTGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGAGTgtatgcatcctctctctctctctctctctctctgttttgttcctttctgtgatgcagctttcctaattgttactgtctgttactt-taatttatttatact

upper sequence: GRMZM2G121820_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA14G04520.1 (Glycine max), 5'ss of exon 1
GGGACCCCGGCGGCGTTCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtccccgcctctcaac-tctccctctttctcggccccttttcccccgcggcccgtt-tgagtcgggcccgccgtggcgtgtggatggggagcata
 |||||| | |  |||||| ||||||||||| ||||| ||||| | |||||| || |||||||||||||||||| |||  |||||||| ||||| ||| |||  ||   |||   ||||     | |   | | | | |   | || |     |   |    | | | |           |    |   | |        | 
CGGACCCTGACAACGTTCTCCAGAGCTGGGATCCCACTCTCGTTAGCCCCTGTACTTGGTTCCACGTCACCTGCAACCAGGACAACCGAGTCACTCGCGTgtatgcatcccctctctctgtgtgtgtgtgtgtgtgttgttgctttcttaattgttactatctgttacttttatttatt-tatattactgctatcagtttt-

upper sequence: GRMZM2G121820_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv08s0040g00520.t01 (Vitis vinifera), 5'ss of exon 1
GGGACCCCGGCGGCGTTCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtccccgcctctcaact-ctccctctttctcggccccttttcccccgcggcccgtttgagtcgggcccgccgtggcgtgtggatggggagcata
  || || | |  ||| || ||||||||||| || |  ||||||||||| || |||||||||||| |||||||  | |  |||  ||||||||| ||  |||  |   || |   || ||  || ||| ||   | |  |   | || |            ||    ||| |       |    | |  ||      | | 
CCGATCCGGACAACGTGCTCCAGAGCTGGGATCCGAACCTCGTCAACCCTTGTACCTGGTTCCACATCACCTGTAATCAGGACGGCCGCGTCACTCGAGTgtatgtattctctatctttctgctactctcttagttttcgtttcgttcctgatatataggtttcatctcgagtttttatttatatatttatttctccctt-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9733713|gb|BE512465.1|BE512465
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|71763196|gb|DR961133.1|DR961133
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|91874179|gb|EB404136.1|EB404136
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|26557278|gb|CA829513.1|CA829513
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|71766703|gb|DR964640.1|DR964640
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|15188221|gb|BI417198.1|BI417198
EST:     CTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGCAATTTGAACTTGTCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: CTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|30087058|gb|CB885266.1|CB885266
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|21809925|gb|BQ668243.1|BQ668243
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|22819416|gb|BU499506.1|BU499506
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|30032043|gb|CB833894.1|CB833894
EST:     GTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: GTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|60394754|gb|DN227624.1|DN227624
EST:     GCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: GCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|148972291|gb|EE023193.2|EE023193
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|31612157|gb|CD568779.1|CD568779
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AAATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|16137383|gb|BI894248.1|BI894248
EST:     ACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGCAA-TTGAAC-TGTCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: ACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|91873861|gb|EB403818.1|EB403818
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|22819407|gb|BU499497.1|BU499497
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|30306876|gb|CD001549.1|CD001549
EST:     TCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|109637591|gb|EC591136.1|EC591136
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|15177611|gb|BI398550.1|BI398550
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGCAATTTGAACTTGTCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|71436702|gb|DR817752.1|DR817752
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|211082646|gb|FL412210.1|FL412210
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|148941830|gb|EC886803.2|EC886803
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|76012011|gb|DT939181.1|DT939181
EST:     CACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: CACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|26559721|gb|CA831956.1|CA831956
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|15177610|gb|BI398549.1|BI398549
EST:     TGCACCTGG-TCCACGTCACCTGCGACCGCGACAACCGCGT-ACCCGCCT                         AGATCTTGGCAATTTGAACTTGTCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|28909789|gb|CB331101.1|CB331101
EST:     TGCACCTGG-TCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|148933348|gb|EC877010.2|EC877010
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|60396509|gb|DN229378.1|DN229378
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|149095177|gb|EE180794.2|EE180794
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|101383854|gb|EB813982.1|EB813982
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|15323606|gb|BI478890.1|BI478890
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGCAATTTGAACTTGTCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|15323607|gb|BI478891.1|BI478891
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGCAATTTGAACTTGTCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|149000067|gb|EE037173.2|EE037173
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|18659525|gb|BM500384.1|BM500384
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGCAATTTGAACTTGTCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|149000533|gb|EE037716.2|EE037716
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|78077979|gb|DV506396.1|DV506396
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|37396731|gb|CF635659.1|CF635659
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|78077978|gb|DV506395.1|DV506395
EST:     ACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: ACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|78089348|gb|DV517722.1|DV517722
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|31997810|gb|CD661783.1|CD661783
EST:     TGCACCTGG-TCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|71448904|gb|DR829954.1|DR829954
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|30031710|gb|CB833561.1|CB833561
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|71319607|gb|DR796562.1|DR796562
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCCCCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|60398400|gb|DN231216.1|DN231216
EST:     ACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: ACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|29576741|gb|CB616853.1|CB616853
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|148994954|gb|EE034307.2|EE034307
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|40334004|gb|CK368074.1|CK368074
EST:     TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: TGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
EST: gi|37381290|gb|CF627520.1|CF627520
EST:     ACCGCGTCACCCGCCT                         AGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA
genomic: ACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 570

GGGACCCCGGCGGCGTTCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 559

GGGACCCCGGCGGCGTTCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 904

GGGACCCCGGCGGCGTTCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 631

GGGACCCCGGCGGCGTTCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtc ... cttctaacagAGATCTTGGTAATTTGAACTTATCTGGTCATCTGGTGCCTGAGCTTGGGAAACTGGAGCATCTTCAGTATCT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGACCCCGGCGGCGTTCTGCAGAGCTGGGACCCCACGCTCGTCAACCCCTGCACCTGGTTCCACGTCACCTGCGACCGCGACAACCGCGTCACCCGCCTgtgagccgtccccgcctctcaactctccctctttctcggccccttttcccccgcggcccgtttgagtcgggcccgccgtggcgtgtggatggggagcata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cggcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcccgcc