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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATAGCGCAGCAAGACGCACGGGCGTAGCGAGGAGCTCCTCGGCCGCTGGTTGCGGTCCCACCGGGCCCCACGGGACAGCGTCGTCGTCGCAACCAAAgggagcaacagcctttagatcctgcccgtacttcggttgcttgtatgtattgtggattttgtgacggagcggtgaactcaacttggtgctttgtttggtgacgctatgctgggagaacag

Basic information

species Zea mays
transcript GRMZM2G121742_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G121742_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g42540.2 (Oryza sativa), 5'ss of exon 3
TCCATAGCGCAGCAAGACGCACGGGCGTAGCGAGGAGCTCCTCGGCCGCTGGTTGCGGTCCCACCGGGCCCCACGGGACAGCGTCGTCGTCGCAACCAAAgggagcaacagcctttagatcctgcccgtacttcggttgcttgtatgtattgtggattttgtgacggagcggtgaactcaacttggtgctttgttt-ggtgacgctatgctgggagaacag
 ||| |||||||  ||||||||||||| ||||||||| |||||||||||||| ||||| ||| |||||||||||| |||||||||||  |||| || || |  | |    | |   |        ||  |||||    ||||   ||  |     | |  | |   ||  |    | ||   ||  |||| ||||| ||||| |||  | |||  | | ||
CCCACAGCGCAGTGAGACGCACGGGCGCAGCGAGGAGTTCCTCGGCCGCTGGCTGCGGGCCCGCCGGGCCCCACGTGACAGCGTCGTGCTCGCCACTAAGgtcaacggtggtca--aagcttcttccacacttca-cagcttcactggctcactcact--gaggtcgactgaatta-tcgttttcttgctgtgttttggtgatgctgcgttggtgggatag