1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCCTAAGAAGCCCAAGGTGAAGAAGCCGAAGGTGACGGTCGCCGAGGCCGCCGTCCTGATCGACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCGgtaaggccgcgtcaaacctctcctccccgtcgaattcctgttaaaaaaatgagatcttgtgatgatggtccggatcaaggttttgtctttttacggatcg...
species | Zea mays |
transcript | GRMZM2G121683_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGTCCTGATCGACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCG GCATCGTACGAGAATCAACAGGACATTCAGCTCATGAGGTTTGCTGATTACEST: gi|148974789|gb|EE025610.2|EE025610
genomic: CCGTCCTGATCGACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCGgtaaggccgc ... ttctgtgcagGCATCGTACGAGAATCAACAGGACATTCAGCTCATGAGGTTTGCTGATTAC
EST: CCGTCCTGATCGACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCG GCATCGTACGAGAATCAACAGGACATTCAGCTCATGAGGTTTGCTGATTACEST: gi|148935876|gb|EC879925.2|EC879925
genomic: CCGTCCTGATCGACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCGgtaaggccgc ... ttctgtgcagGCATCGTACGAGAATCAACAGGACATTCAGCTCATGAGGTTTGCTGATTAC
EST: CCGTCCTGATCGACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCG GCATCGTACGAGAATCAACAGGACATTCAGCTCATGAGGTTTGCTGATTACEST: gi|74236054|gb|DT643968.1|DT643968
genomic: CCGTCCTGATCGACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCGgtaaggccgc ... ttctgtgcagGCATCGTACGAGAATCAACAGGACATTCAGCTCATGAGGTTTGCTGATTAC
EST: GATCGACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCG GCATCGTACGAGAATCAACAGGACATTCAGCTCATGAGGTTTGCTGATTACEST: gi|88755186|gb|DY539327.1|DY539327
genomic: GATCGACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCGgtaaggccgc ... ttctgtgcagGCATCGTACGAGAATCAACAGGACATTCAGCTCATGAGGTTTGCTGATTAC
EST: CCGTCCTGATCGACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCG GCATCGTACGAGAATCAACAGGACATTCAGCTCATGAGGTTTGCTGATTACEST: gi|101392850|gb|EB818356.1|EB818356
genomic: CCGTCCTGATCGACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCGgtaaggccgc ... ttctgtgcagGCATCGTACGAGAATCAACAGGACATTCAGCTCATGAGGTTTGCTGATTAC
EST: CCGTCCTGATCGACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCG GCATCGTACGAGAATCAACAGGACATTCAGCTCATGAGGTTTGCTGATTACEST: gi|18659391|gb|BM500313.1|BM500313
genomic: CCGTCCTGATCGACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCGgtaaggccgc ... ttctgtgcagGCATCGTACGAGAATCAACAGGACATTCAGCTCATGAGGTTTGCTGATTAC
EST: CCGTCCTGATCGACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCG GCATCGTACGAGAATCAACAGGACATTCAGCTCATGAGGTTTGCAGATTACEST: gi|149079880|gb|EE168886.2|EE168886
genomic: CCGTCCTGATCGACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCGgtaaggccgc ... ttctgtgcagGCATCGTACGAGAATCAACAGGACATTCAGCTCATGAGGTTTGCTGATTAC
EST: CCGTCCTGATCGACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCG GCATCGTACGAGAATCAACAGGACATTCAGCTCATGAGGTTTGCTGATTAC
genomic: CCGTCCTGATCGACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCGgtaaggccgc ... ttctgtgcagGCATCGTACGAGAATCAACAGGACATTCAGCTCATGAGGTTTGCTGATTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTAAGAAGCCCAAGGTGAAGAAGCCGAAGGTGACGGTCGCCGAGGCCGCCGTCCTGATCGACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCGgtaaggccgcgtcaaacctctcctccccgtcgaattcctgttaaaaaaatgagatcttgtgatgatggtccggatcaaggttttgtctttttacggatcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaat