1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CATCCATGGCGACCACCACCTCTTCCTCCTCGCTGACCACTCCTCTCCTCCGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAGgtttctgtcctctcccttcgcctttctcttcccgccatctctgccgtcccctaactttctttccgcgtcttgcag
species | Zea mays |
transcript | GRMZM2G121456_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAG GAGCAGGAGGTGCGCTCGTGCCGTAACTACCGCCGTAGCCGGAGGTGCGGTEST: gi|101401421|gb|EB822388.1|EB822388
genomic: CGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAGgtttctgtcc ... cgtcttgcagGAGCAGGAGGTGCGCTCGTGCCGTAACTACCGCCGTAGCCGGAGGTGCGGT
EST: CGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAG GAGCAAGAGGTGCGCTCGTGCCGTAACTACCGCCEST: gi|76281085|gb|DV020653.1|DV020653
genomic: CGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAGgtttctgtcc ... cgtcttgcagGAGCAGGAGGTGCGCTCGTGCCGTAACTACCGCC
EST: CGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAG GAGCAGGAGGTGCGCTCGTGCCGTAACTACCGCCGTAGCCGGAGGTGCGGTEST: gi|32913968|gb|CF018780.1|CF018780
genomic: CGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAGgtttctgtcc ... cgtcttgcagGAGCAGGAGGTGCGCTCGTGCCGTAACTACCGCCGTAGCCGGAGGTGCGGT
EST: CGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAG GAGCAGGAGGTGCGCTCGTGCCGTAACTACCGCCGTAGCCGGAGGTGCGGTEST: gi|86472628|gb|DY238998.1|DY238998
genomic: CGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAGgtttctgtcc ... cgtcttgcagGAGCAGGAGGTGCGCTCGTGCCGTAACTACCGCCGTAGCCGGAGGTGCGGT
EST: CGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAG GAGCAGGAGGTGCGCTCGTGCCGTAACTACCGCCGTACCCGGAGGTGCGGTEST: gi|211481381|gb|FL023993.1|FL023993
genomic: CGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAGgtttctgtcc ... cgtcttgcagGAGCAGGAGGTGCGCTCGTGCCGTAACTACCGCCGTAGCCGGAGGTGCGGT
EST: CGCCCGAACTCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAG GAGCAGGAGGTGCGCTCGTGCCGTAACTACNGCCGTAGCCGGAGGTGCGGTEST: gi|61119391|gb|DN560352.1|DN560352
genomic: CGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAGgtttctgtcc ... cgtcttgcagGAGCAGGAGGTGCGCTCGTGCCGTAACTACCGCCGTAGCCGGAGGTGCGGT
EST: CGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAG GAGCAGGAGGTGCGCTCGTGCCGTAACTACCGCCGTAGCCGGAGGTGCGGT
genomic: CGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAGgtttctgtcc ... cgtcttgcagGAGCAGGAGGTGCGCTCGTGCCGTAACTACCGCCGTAGCCGGAGGTGCGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCCATGGCGACCACCACCTCTTCCTCCTCGCTGACCACTCCTCTCCTCCGCCCGAACCCCAATACCAACCCTGCTCCCAGATCTCTCCAACTCCTCAGgtttctgtcctctcccttcgcctttctcttcccgccatctctgccgtcccctaactttctttccgcgtcttgcag
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