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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAAAGATGACAGAGGTGACCCAGATGTTCGCCCGCTTCAAGGCGGCCTACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacccggcttcactggatctttatcgcccaccgtttacttcccggtgtcccagtttctccgggaaattccgcggctggggggtgggtgtcgtga...

Basic information

species Zea mays
transcript GRMZM2G121452_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G121452_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g25420.2 (Oryza sativa), 5'ss of exon 1
TCCAAAGATGACAGAGGTGACCCAGATGTTCGCCCGCTTCAAGGCGGCCTACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtaccc----ggcttcactggatctt--tatcgcccaccgtttacttcccggtgtcccagtttc-tccgggaaattccgcggctggggggtgggtgtcgtga
||| ||| || |||||||| ||| | ||| ||||||||||||| |||| |||| | |||||| || |||||||||| ||| || |||||||||||||| || | ||| | || | || | | | || ||| | || | |||| ||| | | | | | | |||| |
TCCGAAGCTGGTGGAGGTGACGCAGCTCTTCTCCCGCTTCAAGGCAGCCTTCGCCAGGAACGACTTCGACACCTGCGTAGACCTGCTGTCGCAGCTCAAGgt-cgatcccccgtggatctcgtccgctcctgctgcgttgaaatattcgattctttttatcgctatttcgtccaagtttgttcttgtttcgtcggtgtagg------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50322448|gb|CO517574.1|CO517574
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|31350060|gb|CD434417.1|CD434417
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|28873350|gb|CB329351.1|CB329351
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|71314411|gb|DR793830.1|DR793830
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|76925420|gb|DV170446.1|DV170446
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|211061321|gb|FL214580.1|FL214580
EST:     ACGCC-GCAACGACCTCAACACCTGCGTYACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|60346094|gb|DN213067.1|DN213067
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|211061319|gb|FL214578.1|FL214578
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|71421223|gb|DR805346.1|DR805346
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|76290008|gb|DV029576.1|DV029576
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|91877590|gb|EB407547.1|EB407547
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|71447603|gb|DR828653.1|DR828653
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|74245478|gb|DT653392.1|DT653392
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|32910063|gb|CF014875.1|CF014875
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|76285525|gb|DV025093.1|DV025093
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|15208703|gb|BI430587.1|BI430587
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|211061322|gb|FL214581.1|FL214581
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|211374252|gb|FL175468.1|FL175468
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|211061318|gb|FL214577.1|FL214577
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|50324364|gb|CO519490.1|CO519490
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|32919291|gb|CF024103.1|CF024103
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|76909132|gb|DV163238.1|DV163238
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|50323893|gb|CO519019.1|CO519019
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|28873669|gb|CB329625.1|CB329625
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|32912839|gb|CF017651.1|CF017651
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|89251271|gb|DY623057.1|DY623057
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|31351657|gb|CD436014.1|CD436014
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|91049533|gb|EB159951.1|EB159951
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|76015137|gb|DT942307.1|DT942307
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|88751295|gb|DY535436.1|DY535436
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAGG                         GTCCATCTCACCCAATTCCCCACCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|93282632|gb|EB674896.1|EB674896
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|33091534|gb|CF051528.1|CF051528
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|211058357|gb|FL214575.1|FL214575
EST:     ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: ACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
EST: gi|31355614|gb|CD439971.1|CD439971
EST:     CTCGCAGCTCAAG                         GTCCATCTCACCCAATTCCTCAGCCTTCCGCCCTTGTTTCAGCAGACACCG
genomic: CTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 202

TCCAAAGATGACAGAGGTGACCCAGATGTTCGCCCGCTTCAAGGCGGCCTACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCGAACATTGTGGAGGAGCTCAAACTTGCAA


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 189

TCCAAAGATGACAGAGGTGACCCAGATGTTCGCCCGCTTCAAGGCGGCCTACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCGAACATTGTGGAGGAGCTCAAACTTGCAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 231

TCCAAAGATGACAGAGGTGACCCAGATGTTCGCCCGCTTCAAGGCGGCCTACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCGAACATTGTGGAGGAGCTCAAACTTGCAA


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 116

TCCAAAGATGACAGAGGTGACCCAGATGTTCGCCCGCTTCAAGGCGGCCTACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacc ... aattttgcagGTCCATCTCACCCAATTCCCCAGCCTTCCGCCCTTGTTTCAGCAGACACCGAACATTGTGGAGGAGCTCAAACTTGCAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCAAAGATGACAGAGGTGACCCAGATGTTCGCCCGCTTCAAGGCGGCCTACGCCCGCAACGACCTCAACACCTGCGTCACCCTCCTCTCGCAGCTCAAGgtgcggtacccggcttcactggatctttatcgcccaccgtttacttcccggtgtcccagtttctccgggaaattccgcggctggggggtgggtgtcgtga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcccac