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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCCGCATTCCGCCGCTGCAGAGGCAAGCACCAGGACAGGGCCTCCCCCGACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatctagtggttgaatctatattatactgtggctggcgggttggctggggaccgaggttggtggcggaaatgcagcggctgtcagtctcgtcaat...

Basic information

species Zea mays
transcript GRMZM2G121223_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148963895|gb|EE015006.2|EE015006
EST:     GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG                         AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
EST: gi|211268353|gb|FL138204.1|FL138204
EST:     GACGATGATGCCGCTGCTACCAGAGACGGCGGATGTCGCGCCGACGGCAG                         AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGG
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGG
EST: gi|71772130|gb|DR970067.1|DR970067
EST:     GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG                         AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
EST: gi|211265928|gb|FL138201.1|FL138201
EST:     GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG                         AACAAATTT-GAGGGTGAGCATGATACAGTCACTGAGAAGGA
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGA
EST: gi|148969662|gb|EE020526.2|EE020526
EST:     GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG                         AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
EST: gi|71433771|gb|DR814821.1|DR814821
EST:     GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG                         AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
EST: gi|76018553|gb|DT945723.1|DT945723
EST:     GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG                         AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
EST: gi|211268355|gb|FL138206.1|FL138206
EST:     GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG                         AACAAATTTTGAGGGTGAGCAT
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCAT
EST: gi|149104717|gb|EE290166.2|EE290166
EST:     GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG                         AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
EST: gi|148967941|gb|EE019253.2|EE019253
EST:     GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG                         AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
EST: gi|148972136|gb|EE023006.2|EE023006
EST:     GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG                         AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
EST: gi|31998159|gb|CD661958.1|CD661958
EST:     GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAG                         AACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA
genomic: GACGATGATGCCGCTGCGACCAGAGACGGCGGATGTCGCGCCGACGGCAGgtcaacatct ... tgatcggcagAACAAATTTTGAGGGTGAGCATGATACAGTCACTGAGAAGGACCTAGAACA