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CGCCACGCCATGTCGAAGCCAGCGGATCAGCAGCCGTCGGACATGCAGGTCGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACGgtgagcttaccttccctatccacgaatcctccggcgatatggccccttgttccttctcctgacgggtctcatctcctgtag
species | Zea mays |
transcript | GRMZM2G121022_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACG TGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCGEST: gi|148975996|gb|EE025851.2|EE025851
genomic: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACGgtgagcttac ... tctcctgtagTGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCG
EST: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACG TGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCGEST: gi|211210773|gb|FL332650.1|FL332650
genomic: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACGgtgagcttac ... tctcctgtagTGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCG
EST: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACG TGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCGEST: gi|149106635|gb|EE188528.2|EE188528
genomic: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACGgtgagcttac ... tctcctgtagTGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCG
EST: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACG TGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCGEST: gi|31356396|gb|CD440753.1|CD440753
genomic: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACGgtgagcttac ... tctcctgtagTGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCG
EST: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACG TGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCGEST: gi|211399643|gb|FL347347.1|FL347347
genomic: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACGgtgagcttac ... tctcctgtagTGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCG
EST: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACG TGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCGEST: gi|211260538|gb|FL346342.1|FL346342
genomic: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACGgtgagcttac ... tctcctgtagTGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCG
EST: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACG TGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCGEST: gi|211070155|gb|FL344934.1|FL344934
genomic: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACGgtgagcttac ... tctcctgtagTGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCG
EST: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACG TGCTTGAGCTCATGAGGGANGCGCAGATGCAGCATGGTCTCCGCCAGAGCGEST: gi|211414496|gb|FL334087.1|FL334087
genomic: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACGgtgagcttac ... tctcctgtagTGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCG
EST: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACG TGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCGEST: gi|76286956|gb|DV026524.1|DV026524
genomic: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACGgtgagcttac ... tctcctgtagTGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCG
EST: GACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACG TGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCGEST: gi|211123457|gb|FL321151.1|FL321151
genomic: GACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACGgtgagcttac ... tctcctgtagTGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCG
EST: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACG TGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCGEST: gi|51592489|gb|CV071635.1|CV071635
genomic: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACGgtgagcttac ... tctcctgtagTGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCG
EST: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACG TGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCGEST: gi|211528870|gb|FL340834.1|FL340834
genomic: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACGgtgagcttac ... tctcctgtagTGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCG
EST: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACG TGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCGEST: gi|67026820|gb|CO455569.1|CO455569
genomic: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACGgtgagcttac ... tctcctgtagTGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCG
EST: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACG TGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCG
genomic: CGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACGgtgagcttac ... tctcctgtagTGCTTGAGCTCATGAGGGAGGCGCAGATGCAGCATGGTCTCCGCCAGAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCACGCCATGTCGAAGCCAGCGGATCAGCAGCCGTCGGACATGCAGGTCGACTCCTCCGTCGCCGAGGAGAAGCCGGCCATCAGATTCTCCATCAACGgtgagcttaccttccctatccacgaatcctccggcgatatggccccttgttccttctcctgacgggtctcatctcctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC