Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTGCTGCGTCAAGGCGAGAGCGGCGGCGCCCGAGTCTGAGGCCAAGTGCCATGCCACCGTGGTTTCGGGATGGTTCACCGAGCCACGATCACACTGCGgtacgcccctggttcccttgcttcatgacatgtactattttttattaccactgtcatctcttaactggctattttattccaccctgattgctgcctgtgcag

Basic information

species Zea mays
transcript GRMZM2G120578_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G120578_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g15550.2 (Oryza sativa), 5'ss of exon 2
CCTTGCTGCGTCAAGGCGAGAGCGGCGGCGCCCGAGTCTGAGGCCAAGTGCCATGCCACCGTGGTTTCGGGATGGTTCACCGAGCCACGATCACACTGCGgtacgc--ccctggt-tcccttgcttcatgacatgtactattttttattaccactgtcatctcttaactggctattttattccaccctgattgctgcctgtgcag
||||||||||||||||| || ||||||||||| || || |||||||||||||| ||||||||||| || ||||||||||||||||| || || | | |||||| |   |  || | |  |||| ||| |||     || ||   |  ||    |  |  | |      ||   || ||  |    |   |||   |  |||||||
CCTTGCTGCGTCAAGGCCAGGGCGGCGGCGCCTGAATCCGAGGCCAAGTGCCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCGgtatgtgacgttgttgtttcttgattcttgatgatgacgatagatgctttatgccctattttggatgatgatgatgttcgtttgtctgaattttggtttgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149079124|gb|EE168043.2|EE168043
EST:     CCATGCCACCGTGGTTTCGGGATGGTTCACCGAGCCACGATCACACTGCG                         GTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAG
genomic: CCATGCCACCGTGGTTTCGGGATGGTTCACCGAGCCACGATCACACTGCGgtacgcccct ... gcctgtgcagGTAAAGCCAGCAAGGTTCAGTATTACAATAACCCAATGTGGCCAG