Sequence
atgc intronic sequence ATGC exonic sequenceCGTCGGGCGTCTTCCAGATCAACACCGCGGTTGCCACGTTCCAGCGCCTCGTCAACACGCTCGGCACGCCCAAGGATACCCCCGACCTCCGCGACAGGATgtacgtcccgccttcctgccttacctcacctccaatctgttttgattgccttgcctcaacccccatccgttttgatttcgcggactcggtccgctccggc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G120115_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g15110.1 (Oryza sativa), 5'ss of exon 1
CGTCGGGCGTCTTCCAGATCAACACCGCGGTTGCCACGTTCCAGCGCCTCGTCAACACGCTCGGCACGCCCAAGGATACCCCCGACCTCCGCGACAGGATgtacgtcccgccttcctgccttacctc--acctccaatctgttttgattgccttgcctcaacccccatccgtt-ttgatttcgcggactcggtccgctccggc
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CGTCGGGGGTGTTCCAGATCAACACGGCGGTGTCGACGTTCCAGCGGCTGGTCAACACGCTCGGCACGCCCAAGGACACCCCCGACCTCCGCGAGAGGATgtgaggctc-cccccgcgccatactctctacctaccccacgtctgtttggttttggtttgatttggagcgggggtcgggggatcgattttggttcgatttg--
upper sequence: GRMZM2G120115_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA09G33950.1 (Glycine max), 5'ss of exon 1
CGTCGGGCGTCTTCCAGATCAACACCGCGGTTGCCACGTTCCAGCGCCTCGTCAACACGCTCGGCACGCCCAAGGATACCCCCGACCTCCGCGACAGGATgtacgtcccgccttcctgccttacctcacctcca----atctgttttgatt----gccttgcctcaacccccatccgttttgatttcgc--ggactcggtccgctccggc-----------------------------
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CTTCCGGCATCTTTCAGATCAACACCGCTGTCTCCACGTTCCAGAGACTCGTCAACACCCTAGGAACCCCCAAGGACACCCCCGAGCTCCGTGATAAGCTgtgagatcatcatcatcacactctcttatatatatatgatttgcttcgattttgtggtttggattgatcggatttcgtgttgcttctatttaagataaggattcgacgattgaatcgagtttttgttcgcaatttgcag
upper sequence: GRMZM2G120115_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA16G13410.1 (Glycine max), 5'ss of exon 1
CGTCGGGCGTCTTCCAGATCAACACCGCGGTTGCCACGTTCCAGCGCCTCGTCAACACGCTCGGCACGCCCAAGGATACCCCCGACCTCCGCGACAGGATgtacgtcccgccttcctgccttacctcacctccaatctgttttg-attgccttgcctcaacccccatccgttttgatttcgcggactcggtccgctc-cggc-
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CTGCCGGCATATTCCAGATCAACACTGCCGTCTCCACCTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAAGACACCCTCGACCTCCGCGAAAAGCTgttagttattctttcatttgtcat-tcgccttttgttgattccacgttgcttggtgtt--ttggtgatcgcttttttatagtattctcaatttaattgcagtg
upper sequence: GRMZM2G120115_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA16G08200.1 (Glycine max), 5'ss of exon 1
CGTCGGGCGTCTTCCAGATCAACACCGCGGTTGCCACGTTCCAGCGCCTCGTCAACACGCTCGGCACGCCCAAGGATACCCCCGACCTCCGCGACAGGATgtacgtcccgccttcctgccttacctcacctccaatctgttttgattgccttgcctcaacccccatccgttttgatttcgcggactcggtccgctccggc-----
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CTGCCGGAATATTCCAGATCAACACCGCCGTCTCCACCTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAAGACACCCCCGACCTCCGCGAAAAACTgttagttct--tttaacaatttatcattgcttttttcgtttccccaagaaatacgaccaattttattt-tgttgattcagctgaattg--cccttcgagttacaa
upper sequence: GRMZM2G120115_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA01G01960.1 (Glycine max), 5'ss of exon 1
CGTCGGGCGTCTTCCAGATCAACACCGCGGTTGCCACGTTCCAGCGCCTCGTCAACACGCTCGGCACGCCCAAGGATACCCCCGACCTCCGCGACAGGATgtacgtcccgccttcctgcc----ttacctcacctcca---atctgttttgatt----gccttgcctcaacccccatccgttttgatttcgcggactcggtccgctccggc--------------------------------
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CTTCCGGCATCTTTCAGATCAACACCGCCGTCTCCACGTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAGGACACCCCCGAACTCCGCGATAAGCTgtgagatcatcatcataatcataatcactctctctctatacatttgcctcgattttgtggtttggattgatcggattgcgtgttgcttctgttttaagataacgattcgacgattgaatcgagtttttgttcgaaatttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211515490|gb|FL022309.1|FL022309EST: GTCAACACGCTCGGCACGCCCAAGGATACCCCCGACCTCCGCGACAGGAT ACATAAAACACGGCAACACATAACACAACTAGTGAAGGATACATCAGACAA
genomic: GTCAACACGCTCGGCACGCCCAAGGATACCCCCGACCTCCGCGACAGGATgtacgtcccg ... ttgatcgcagACATAAAACACGGCAACACATAACACAACTAGTGAAGGATACATCAGACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGTCGGGCGTCTTCCAGATCAACACCGCGGTTGCCACGTTCCAGCGCCTCGTCAACACGCTCGGCACGCCCAAGGATACCCCCGACCTCCGCGACAGGATgtacgtcccgccttcctgccttacctcacctccaatctgttttgattgccttgcctcaacccccatccgttttgatttcgcggactcggtccgctccggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcccgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgctcc