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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGCGCAGCGGCGGCCGACGGTGGCGCTGCTTCTGGGCCTGGCGCTCGCCTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAGgtacggcccttccgccccgtattcccaagccctagccagcacaccaagccgacgggttcgccctgctctcacgcag

Basic information

species Zea mays
transcript GRMZM2G119791_T05
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119791_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g36420.1 (Oryza sativa), 5'ss of exon 1
GCGGCGCAGCGGCGGCCGACGGTGGCGCTGCTTCTGGGCCTGGCGCTCGCCTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAGgtacggcccttccgccc----cgtattcccaagccctagccagcacaccaagccgacgggttcgccctg-ctctcacgcag
 || ||| ||| ||||| ||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| |||| ||  ||  |  |  ||  ||     | ||         ||    |             || |||   |    |  ||||  ||||
CCGCCGCCGCGCCGGCCCACGGTGGTGCTGCTTCTGGGGCTGGCCCTCGCCTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCATTCTTCACCGCTCCGAgtgagagcgctctcccgaaaacctagctttcgttccccttcgttgtgtgggattgatggggagggatggattctcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211445810|gb|FL398457.1|FL398457
EST:     CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAG                         GGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG
genomic: CTTCTGCCTCGCCGTCCTCTCCATCCAGTCCTCCTTCTTCGCCGCCCCAGgtacggccct ... tctcacgcagGGGCGCCGGGCAGGAGGCTGGATCTGGACGCCGACGACGTGCGCGAGCTCG