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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGGGCAGCCGTCCTAGTACTCGGTTGGTCCTCCCCTGCTGCCCTTCTACGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgggttgatttcaccgtgtcgtgatttgtccggacggtgcaagtccaaatctttcctcgccactgcataaaaatttaaatttttgctgcgaga...

Basic information

species Zea mays
transcript GRMZM2G119725_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148930418|gb|EE284901.2|EE284901
EST:     CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTG                         CGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
genomic: CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgg ... acaactgcagCGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
EST: gi|149108358|gb|EE292696.2|EE292696
EST:     CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTG                         CGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
genomic: CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgg ... acaactgcagCGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
EST: gi|211020902|gb|FL324490.1|FL324490
EST:     CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTG                         CGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
genomic: CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgg ... acaactgcagCGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
EST: gi|76930436|gb|DV172388.1|DV172388
EST:     CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTG                         CGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
genomic: CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgg ... acaactgcagCGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
EST: gi|148937093|gb|EC881269.2|EC881269
EST:     CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTG                         CGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
genomic: CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgg ... acaactgcagCGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
EST: gi|37424382|gb|CF649923.1|CF649923
EST:     CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTG                         CGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
genomic: CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgg ... acaactgcagCGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
EST: gi|211226340|gb|FL315376.1|FL315376
EST:     CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTG                         CGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
genomic: CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgg ... acaactgcagCGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
EST: gi|211485903|gb|FL317494.1|FL317494
EST:     CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTG                         CGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
genomic: CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgg ... acaactgcagCGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
EST: gi|211457499|gb|FL333172.1|FL333172
EST:     CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTG                         CGGNGCAAGTTCCGTCGATAGTCAATACTGCGTTGTGGTGTTGAGCTAATA
genomic: CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgg ... acaactgcagCGGGGCAAGTTCCGTGGATAGTCAATACTGC-TTGTGCTGTTGAGCTAATA
EST: gi|211404454|gb|FL338957.1|FL338957
EST:     CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTG                         CGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
genomic: CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgg ... acaactgcagCGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
EST: gi|211017912|gb|FL318017.1|FL318017
EST:     CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTG                         CGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
genomic: CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgg ... acaactgcagCGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
EST: gi|211220721|gb|FL343735.1|FL343735
EST:     CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTG                         CGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
genomic: CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgg ... acaactgcagCGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
EST: gi|148961302|gb|EE012027.2|EE012027
EST:     CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTG                         CGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
genomic: CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgg ... acaactgcagCGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
EST: gi|211391716|gb|FL351031.1|FL351031
EST:     CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTG                         CGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
genomic: CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgg ... acaactgcagCGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
EST: gi|211354854|gb|FL354353.1|FL354353
EST:     CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTG                         CGGGGCAAGTTCCGTCGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
genomic: CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgg ... acaactgcagCGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
EST: gi|211107153|gb|FL361596.1|FL361596
EST:     CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTG                         CGGGGCAAGTTCCGTCGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
genomic: CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgg ... acaactgcagCGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
EST: gi|211160210|gb|FL316342.1|FL316342
EST:     CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTG                         CGGGGCAAGTTCCGTCGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
genomic: CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgg ... acaactgcagCGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
EST: gi|149104738|gb|EE290190.2|EE290190
EST:     CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTG                         CGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT
genomic: CGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgg ... acaactgcagCGGGGCAAGTTCCGTGGATAGTCAATACTGCTTGTGCTGTTGAGCTAATAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCGGGCAGCCGTCCTAGTACTCGGTTGGTCCTCCCCTGCTGCCCTTCTACGGTGGAGGAGCGGAGATCCTGCCGTTTTCCGGCTGATTTCTTCTAATTGgtatgcccgggttgatttcaccgtgtcgtgatttgtccggacggtgcaagtccaaatctttcctcgccactgcataaaaatttaaatttttgctgcgaga

- - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT