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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCCGCCGCCACTGCCGCCACCACGGCCGTCGCTGGAGAAGGAGATCGAGGCCGTTCTGTCCCGCGGCGCTGGCGTCCACGTTGTACCCACCTTCGCCGgtaagctcccgcatccggacaataactggacatgagataccccgctttcttagattcgtcaatgtgaccttgttggttgacaatttgagtttgagttaaa...

Basic information

species Zea mays
transcript GRMZM2G119261_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119261_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g01970.1 (Oryza sativa), 5'ss of exon 1
GGCCCGCCGCCACTGCCGCCACCACGGCCGTCGCTGGAGAAGGAGATCGAGGCCGTTCTGTCCCGCGGCGCTGGCGTCCACGTTGTACCCACCTTCGCCGgtaagctcccgcatccggacaataactggacatgagataccccgctttctta-gattcgtcaatgtgaccttgttggttgacaatttgagtt-tgagttaaa--
 || |   |  |  |||  ||   |  ||| || ||    ||||  || ||||||| ||||| ||||| || ||||||||||| || ||| ||||||| ||||||| ||||  ||||||    |     |  |  |         |||||||  |  | |  ||||    |||||     |  | || | |  || ||  ||  
CGCGCCTGGATAGAGCCCGCAAAGCTTCCGCCGGTGAGCGAGGAAGTCCAGGCCGTCCTGTCGCGCGGAGCCGGCGTCCACGTCGTCCCCTCCTTCGCAGgtaagcccccgactccggaatgaactaaaatttagggctattttttttcttacaaagccttcatgt----ttgttaaacaatgacttcattcatgggtgtaatt