1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TACCGCCGCCGCTTCGTTCTCTAACCTTGGCTCCCGCTCCCTCCGCAGGAGCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATGgtaagatctccctcccccttactctctcgcctgttgcatcttcgctgccctgcagccatggatttggcgtcgcccttgcgaactcctgacgtgcaacgggccttgtttctggttccag
species | Zea mays |
transcript | GRMZM2G119169_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATG GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGTEST: gi|33095182|gb|CF055176.1|CF055176
genomic: GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATGgtaagatctc ... ctggttccagGTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT
EST: GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATG GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGTEST: gi|211383659|gb|FL000696.1|FL000696
genomic: GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATGgtaagatctc ... ctggttccagGTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT
EST: GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATG GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGTEST: gi|211383667|gb|FL000704.1|FL000704
genomic: GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATGgtaagatctc ... ctggttccagGTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT
EST: GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATG GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGTEST: gi|32944401|gb|CF049220.1|CF049220
genomic: GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATGgtaagatctc ... ctggttccagGTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT
EST: GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATG GTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT
genomic: GCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATGgtaagatctc ... ctggttccagGTGAAATATTCGACGGAGCCAACCAACCCCACCAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCGCCGCCGCTTCGTTCTCTAACCTTGGCTCCCGCTCCCTCCGCAGGAGCATCTCAACACCGCCTTGAGGACCCCCCAACTCGCCGGCTGCAGCCATGgtaagatctccctcccccttactctctcgcctgttgcatcttcgctgccctgcagccatggatttggcgtcgcccttgcgaactcctgacgtgcaacgggccttgtttctggttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG