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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATGTATTTGCCTTGGATATATATTTTTTTCACCAAACCTAAACATCCGTCCCATAAATTCTGTAGTTGCACGCAATGGCAAACCGATTGGACCACAGgtacgctgctcctccatctactctctctctcatcgttgtttgcactgcatagtgcatggtatgctaggtagcatcagctacgaattctaaagtactgcaacaagagaatacttgctaaccaaacgcatggacacgtag

Basic information

species Zea mays
transcript GRMZM2G118003_T04
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31664105|gb|CD573285.1|CD573285
EST:     TTGCACGCAATGGCAAGCCGATTGGGCCACAG                         GCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
genomic: TTGCACGCAATGGCAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
EST: gi|31909830|gb|CD651115.1|CD651115
EST:     GGCAAACCGATTGGACCACAG                         GCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
genomic: GGCAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
EST: gi|101393332|gb|EB818597.1|EB818597
EST:     CAAACCGATTGGACCACAG                         GCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
genomic: CAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
EST: gi|67010696|gb|CO439445.1|CO439445
EST:     CGCAATGGCAAACCGATTGGACCACAG                         GCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
genomic: CGCAATGGCAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
EST: gi|5069778|gb|AI737743.1|AI737743
EST:     TTGCACGCAATGGCAAACCGATTGGACCACAG                         GCGAATTGTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
genomic: TTGCACGCAATGGCAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
EST: gi|29543409|gb|CB603805.1|CB603805
EST:     TTGCACGCAATGGCAAACCGATTGGACCACAG                         GCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
genomic: TTGCACGCAATGGCAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
EST: gi|37384568|gb|CF629372.1|CF629372
EST:     TGCACGCAATGGCAAACCGATTGGACCACAG                         GCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
genomic: TGCACGCAATGGCAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
EST: gi|19822253|gb|BQ048277.1|BQ048277
EST:     TTGCACGCAATGGCAAACCGATTGGACCACAG                         GCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
genomic: TTGCACGCAATGGCAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
EST: gi|4776298|gb|AI665301.1|AI665301
EST:     TTGCACGCAATGGCAAACCGATTGGACCACAG                         GCGAATTNTAAGTGGCTTTACATCGCNCCGACGGGGATGTACGGGTGCGTG
genomic: TTGCACGCAATGGCAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
EST: gi|44900753|gb|CK827298.1|CK827298
EST:     TTGCACGCAATGGCAAACCGATTGGACCACAG                         GCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
genomic: TTGCACGCAATGGCAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
EST: gi|60339007|gb|DN205980.1|DN205980
EST:     TTGCACGCAATGGCAAACCGATTGGACCACAG                         GCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
genomic: TTGCACGCAATGGCAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
EST: gi|26457057|gb|CA828640.1|CA828640
EST:     TGCACGCAATGGCAAACCGATTGGACCACAG                         GCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGCATGTACGGGTGCGT
genomic: TGCACGCAATGGCAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGG-ATGTACGGGTGCGT
EST: gi|19822445|gb|BQ048469.1|BQ048469
EST:     TTGCACGCAATGGCAAACCGATTGGACCACAG                         GCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
genomic: TTGCACGCAATGGCAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
EST: gi|40334112|gb|CK368182.1|CK368182
EST:     TTGCACGCAATGGCAAACCGATTGGACCACAG                         GCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
genomic: TTGCACGCAATGGCAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
EST: gi|60353267|gb|DN220240.1|DN220240
EST:     TTGC-CGCAATGGCAAACCGATTGGACCACAG                         GCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
genomic: TTGCACGCAATGGCAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
EST: gi|148928823|gb|EC873677.2|EC873677
EST:     TTGCACGCAATGGCAAACCGATTGGACCACAG                         GCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
genomic: TTGCACGCAATGGCAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
EST: gi|60336744|gb|DN203717.1|DN203717
EST:     GCAATGGCAAACCGATTGGACCACAG                         GCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
genomic: GCAATGGCAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
EST: gi|211467826|gb|FL451270.1|FL451270
EST:     GTCCCATAAATTCTGTAGTTGCACGCAATGGCAAACCGATTGGACCACAG                         GCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
genomic: GTCCCATAAATTCTGTAGTTGCACGCAATGGCAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
EST: gi|32165128|gb|CD670446.1|CD670446
EST:     CGATTGGACCACAG                         GCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
genomic: CGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG
EST: gi|211275276|gb|FL057455.1|FL057455
EST:     GTCCCATAAATTCTGTAGTTGCACGCAATGGCAAACCGATTGGACCACAG                         GCGAATTCTAAGTGGCTCTACATCGCCCCGAC-GGAATGTACGGGTGCGTG
genomic: GTCCCATAAATTCTGTAGTTGCACGCAATGGCAAACCGATTGGACCACAGgtacgctgct ... ggacacgtagGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTG