1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCGGCAGCCAGCCATGGATGAGGAGTACGACGTGATCGTACTAGGCACGGGGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgcccgctcgcttcccctacagccgcagctagtacgatccatagctgccgtgctcggaatttgggtccgcgtataagtccggtgcttcaaggt...
species | Zea mays |
transcript | GRMZM2G117507_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTGGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|211472428|gb|FL096498.1|FL096498
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTGGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|33101206|gb|CF061166.1|CF061166
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTCEST: gi|15590140|gb|BI674756.1|BI674756
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTCEST: gi|211474937|gb|FL096500.1|FL096500
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTCEST: gi|211474947|gb|FL096510.1|FL096510
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTGGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|211474946|gb|FL096509.1|FL096509
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTGGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|60396978|gb|DN229797.1|DN229797
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTCEST: gi|29544525|gb|CB604905.1|CB604905
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTCEST: gi|211472424|gb|FL096494.1|FL096494
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTGGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|211472420|gb|FL096490.1|FL096490
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTGGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|31351669|gb|CD436026.1|CD436026
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTCEST: gi|33101002|gb|CF060962.1|CF060962
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTCEST: gi|211474939|gb|FL096502.1|FL096502
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTCEST: gi|211474948|gb|FL096511.1|FL096511
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTGGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|211474938|gb|FL096501.1|FL096501
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTCEST: gi|211474941|gb|FL096504.1|FL096504
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCGAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTCEST: gi|31360108|gb|CD444465.1|CD444465
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAG GTTGGGGGTATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTCEST: gi|211472423|gb|FL096493.1|FL096493
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTGGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|211472427|gb|FL096497.1|FL096497
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTCEST: gi|211472426|gb|FL096496.1|FL096496
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTCEST: gi|211474943|gb|FL096506.1|FL096506
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTCEST: gi|211472429|gb|FL096499.1|FL096499
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTGGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|29946002|gb|CB815929.1|CB815929
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTCEST: gi|26557597|gb|CA829832.1|CA829832
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAAGACGGCCTCAAG GATTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTCEST: gi|211113229|gb|FL096514.1|FL096514
genomic: GCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGT-AGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
EST: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTGGACGGCCTCAAG GTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCGCTC
genomic: GGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgc ... gatattatagGTTTTGCATATGGACAGAAATGACTACTATGGAGGAGATTCCACCTCACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGCAGCCAGCCATGGATGAGGAGTACGACGTGATCGTACTAGGCACGGGGCTCAAGGAGTGCATCCTCAGCGGTCTCCTCTCTGTAGACGGCCTCAAGgtaagcccgcccgctcgcttcccctacagccgcagctagtacgatccatagctgccgtgctcggaatttgggtccgcgtataagtccggtgcttcaaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctaca