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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATCCTTCCCGTGGCGACGTCTGGGTGACCGCTGCCGCAGCCCTACACTAGGTTCCTAGGTATTCGCCGGGCCCTTCCCCGGCGACGAGCACCCACCATgtatgtccaccccttcctcttccataccttacaaaacctacccaaaccctaaattaaactgtttggctatttgtattcggatctgatctaactacaaatg...

Basic information

species Zea mays
transcript GRMZM2G116952_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89758336|gb|DY687550.1|DY687550
EST:     AGGTTCCTAGGTATTCGCCGGGCCCTTCCCCGGCGACGAGCACCCACCAT                         GTACATGAGAAATCCTTTTTCAAATTTGTAGCTTAGGCTACCTCTGTGGGG
genomic: AGGTTCCTAGGTATTCGCCGGGCCCTTCCCCGGCGACGAGCACCCACCATgtatgtccac ... atgacaaaagGTACATGAGAAATCCTTTTTCAAATTTGTAGCTTAGGCTACCTCTGTGGGG
EST: gi|91878961|gb|EB408918.1|EB408918
EST:     AGGTTCCTAGGTATTCGCCGGGCCCTTCCCCGGCGACGAGCACCCACCAT                         GTACATGAGAAATCCTTTTTCAAATTTGTAGCTTAGGCTACCTCTGTGGGG
genomic: AGGTTCCTAGGTATTCGCCGGGCCCTTCCCCGGCGACGAGCACCCACCATgtatgtccac ... atgacaaaagGTACATGAGAAATCCTTTTTCAAATTTGTAGCTTAGGCTACCTCTGTGGGG