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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCACGGCGCACAGATACCTTTTCTCTCCTCTCCCGTCCCACTCTCCTGGGCAATCCCGGCCCGGCATGGCGAGCCCGTCCTCGTCCCCCTCGCGGAAGgtaagaatctctagaccatctcccgaccgcccacatccgatccagccgcgtgcgaggtcgccgttcgatttgactgatcttgctgtttccacccctttgtctgggttcctttctccgcacacatgggtgcgcgcgtgcag

Basic information

species Zea mays
transcript GRMZM2G116840_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50337825|gb|CO532951.1|CO532951
EST:     GGCAATCCCGGCCCGGCATGGCGAGCCCGTCCTCGTCCCCCTCGCGGAAG                         GCTCTGAGCAAGATCGCCTGCAGCCGCCTGCAGAAGGAGCTCGCGGAGTGG
genomic: GGCAATCCCGGCCCGGCATGGCGAGCCCGTCCTCGTCCCCCTCGCGGAAGgtaagaatct ... gcgcgtgcagGCTCTGAGCAAGATCGCCTGCAGCCGCCTGCAGAAGGAGCTCGCGGAGTGG
EST: gi|76013713|gb|DT940883.1|DT940883
EST:     GGCAATCCCGGCCCGGCATGGCGAGCCCGTCCTCGTCCCCCTCGCGGAAG                         GCTCTGAGCAAGATCGCCTGCAGCCGCCTGCAGAAGGAGCTCGCGGAGTGG
genomic: GGCAATCCCGGCCCGGCATGGCGAGCCCGTCCTCGTCCCCCTCGCGGAAGgtaagaatct ... gcgcgtgcagGCTCTGAGCAAGATCGCCTGCAGCCGCCTGCAGAAGGAGCTCGCGGAGTGG