1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAAGAAGACGTATAGAGAGAAGCAGAATACAAAGACTGGAGAGGAGCTGCTGGATCTCATTCACCGGCCTACAGCTAAGGAGACTGCAGTCGCTGCAAAGgtttgttctttcttcaccctgtgatgtttttaaccgagttgttggagctgccactggtaactacatgacggcttagtgtgaaagactaggcaactttatt...
species | Zea mays |
transcript | GRMZM2G116563_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGATCTCATTCACCGGCCTACAGCTAAGGAGACTGCAGTCGCTGCAAAG TTTAAAACAAAGGGTGGCTCCCAGCTGAAGGAATATTGTACCAACTTAACTEST: gi|93281451|gb|EB673715.1|EB673715
genomic: TGGATCTCATTCACCGGCCTACAGCTAAGGAGACTGCAGTCGCTGCAAAGgtttgttctt ... ttcctttcagTTTAAAACAAAGGGTGGCTCCCAGCTGAAGGAATATTGTACCAACTTAACT
EST: TGGATCTCATTCACCGACCTACAGCTAAGGAGACTGCAGTCGCTGCAAAG TTTAAAACAAAGGGTGGCTCCCAGCTGAGGGAATATTGTACCAACTTA
genomic: TGGATCTCATTCACCGGCCTACAGCTAAGGAGACTGCAGTCGCTGCAAAGgtttgttctt ... ttcctttcagTTTAAAACAAAGGGTGGCTCCCAGCTGAAGGAATATTGTACCAACTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGAAGACGTATAGAGAGAAGCAGAATACAAAGACTGGAGAGGAGCTGCTGGATCTCATTCACCGGCCTACAGCTAAGGAGACTGCAGTCGCTGCAAAGgtttgttctttcttcaccctgtgatgtttttaaccgagttgttggagctgccactggtaactacatgacggcttagtgtgaaagactaggcaactttatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG