1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGCACGGGAGCCAGCTCGGCGACTGCGTCGCCGGCTTCCTCCGCCGCTTCTCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtcgctgcggaagctctggttttgttgacttgtgctgccgtgtgcgtgccatgcaggagcaggacccccccaattagagtgttacgggtgtgc...
species | Zea mays |
transcript | GRMZM2G116514_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCAC TTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCAEST: gi|76286369|gb|DV025937.1|DV025937
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtc ... tatttgccagTTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCA
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCAC TTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCAEST: gi|15100365|gb|BI396156.1|BI396156
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtc ... tatttgccagTTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCA
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCAC TTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCAEST: gi|71319572|gb|DR796532.1|DR796532
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtc ... tatttgccagTTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCA
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCAC TTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCAEST: gi|26457322|gb|CA828905.1|CA828905
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtc ... tatttgccagTTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCA
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCAC TTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCAEST: gi|149072555|gb|EE040236.2|EE040236
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtc ... tatttgccagTTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCA
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCAC TTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCAEST: gi|148967078|gb|EE018245.2|EE018245
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtc ... tatttgccagTTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCA
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCAC TTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCAEST: gi|87155865|gb|DY400654.1|DY400654
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtc ... tatttgccagTTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCA
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCAC TTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCAEST: gi|211304275|gb|FL115012.1|FL115012
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtc ... tatttgccagTTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCA
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCAC TTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCAEST: gi|78075433|gb|DV503867.1|DV503867
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtc ... tatttgccagTTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCA
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCAC TTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCAEST: gi|21390183|gb|BQ528232.1|BQ528232
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtc ... tatttgccagTTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCA
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCAC TTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCAEST: gi|148982101|gb|EE028150.2|EE028150
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtc ... tatttgccagTTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCA
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCAC TTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCAEST: gi|211304280|gb|FL115017.1|FL115017
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtc ... tatttgccagTTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCA
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCAC TTTGGAGAAAATGGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCEST: gi|26558680|gb|CA830915.1|CA830915
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtc ... tatttgccagTTTGGAGAAAATGGG-AGCTCTTGACTGGAATAAAATTGTCCATCAAAACC
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCAC TTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCAEST: gi|71764176|gb|DR962113.1|DR962113
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtc ... tatttgccagTTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCA
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCAC TTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCAEST: gi|22473298|gb|BU037778.1|BU037778
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtc ... tatttgccagTTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCA
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCAC TTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCAEST: gi|71309285|gb|DR790929.1|DR790929
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtc ... tatttgccagTTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCA
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCAC TTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCAEST: gi|76020121|gb|DT947291.1|DT947291
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtc ... tatttgccagTTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCA
EST: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCAC TTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCA
genomic: TCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtc ... tatttgccagTTTGGAGAAAATGGGAGCTCTTGACTGGAATAAAATTGTCCATCAAAACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCACGGGAGCCAGCTCGGCGACTGCGTCGCCGGCTTCCTCCGCCGCTTCTCCTTCCAGCCGCTCCGCGAGAACCCGCTGCTCGGCCCGTCCTCCTCCACgtacgttgtcgctgcggaagctctggttttgttgacttgtgctgccgtgtgcgtgccatgcaggagcaggacccccccaattagagtgttacgggtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC