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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCCAGCACACGCTGCGCAGCCTCTGCGGCCACGACGACGCGCAGTGGGTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgccgttcgttcgacatgcatgcgcgcgaccttcgttcggtgtccttgtcgtcgtccatccctgacgcgctccggcgctgcgtctagtagtctggtctggttcggcggccacggccttctgggtcgttgctggtgctgattaaattgtttatccggccgctgttcag

Basic information

species Zea mays
transcript GRMZM2G116185_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G116185_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g50900.1 (Oryza sativa), 5'ss of exon 1
TGCTCCAGCACACGCTGCGCAGCCTCTGCGGCCACGACGACGCGCAGTGGGTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgccgttcgttcgacatgcatgcgcgcgaccttcgttcggtgtccttgtcgtcgtccatccctgacgcgctccggcgctgcgtctagtagtctggtctggttcggcggccacggccttctgggtcgttgctggtgctgattaaattgtttatccggccgctgttcag
| || ||||||||||||||| ||||||||  ||| | |||| | |||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||  |  |  | | |   || |  ||   |   ||  | | || |  ||   | ||    |  | |     |  |  |  || | | |     |  |  |  | |  |      ||  | |   |  || ||     || | |                         
TACTGCAGCACACGCTGCGCGGCCTCTGCACCCAAGGCGACTCCCAGTGGGTGTACGCCGTCTTCTGGCGAATCCTCCCAAGAAACTACCCTCCTCCAAAgtgagtcaac--taatccca---gctta-gctgaatactcacttgatgacactgat-tagtttgacagtaaaagaattagcagtagcattttgctccatatttagtattgatgctagttgctgtttt--tttttcctcaatatggtcag------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78086977|gb|DV515370.1|DV515370
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|71441212|gb|DR822262.1|DR822262
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|78092358|gb|DV520732.1|DV520732
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|71299046|gb|DR785511.1|DR785511
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|91055983|gb|EB166401.1|EB166401
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|101385166|gb|EB814629.1|EB814629
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|76291869|gb|DV031437.1|DV031437
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|71316518|gb|DR794933.1|DR794933
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|20803186|gb|BQ294236.1|BQ294236
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|148953903|gb|EC899284.2|EC899284
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|76934748|gb|DV174011.1|DV174011
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|50336434|gb|CO531560.1|CO531560
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|91048202|gb|EB158620.1|EB158620
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCCAA                         ATGGGATCTCCAGGGCGGCATATACAACCGGACAAGAGGGACCAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|40335358|gb|CK369428.1|CK369428
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCCAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGA
EST: gi|91049965|gb|EB160383.1|EB160383
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|86472078|gb|DY238448.1|DY238448
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         GTGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|71442162|gb|DR823212.1|DR823212
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|26456486|gb|CA828069.1|CA828069
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|78084497|gb|DV512890.1|DV512890
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|93012864|gb|EB638384.1|EB638384
EST:     GTGTACGCCGTCTTCTGGTGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|149109966|gb|EE293776.2|EE293776
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|101393159|gb|EB818510.1|EB818510
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|50330625|gb|CO525751.1|CO525751
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|76014748|gb|DT941918.1|DT941918
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|101395608|gb|EB819733.1|EB819733
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
EST: gi|78112591|gb|DV530985.1|DV530985
EST:     GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAA                         ATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA
genomic: GTGTACGCCGTCTTCTGGCGGATCCTCCCCAGAAACTACCCGCCCCCAAAgtgagtcgcc ... cgctgttcagATGGGATCTCCAGGGCGGCATATACGACCGGACAAGAGGGAACAGGAGGAA