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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCGCCGCCGAATCCGAGACTCCGATCTCGGGTTCACCGCAGCGCACAGAGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGgtgttcgcctcctccagatctcttgctgtctcgcttgttacttttttgtttgcttttcggcgtccgatctggtgcgacggcgggtctgggtccatctggc...

Basic information

species Zea mays
transcript GRMZM2G116034_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19351508|gb|BM896040.1|BM896040
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|149057504|gb|EE156642.2|EE156642
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|211292598|gb|FL286205.1|FL286205
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|87151961|gb|DY396750.1|DY396750
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|211294745|gb|FL286225.1|FL286225
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|148931048|gb|EC873642.2|EC873642
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|211319193|gb|FL039360.1|FL039360
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAG                         GAATNGCACCTGAGGGTTCTCAGTTCGATGCTAAGCACTATGATTCTAAGA
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGgtgttcgcct ... gtcatggcagGAATGGCACCTGAGGGTTCTCAGTTCGATGCTAAGCACTATGATTCTAAGA
EST: gi|5555520|gb|AI881471.1|AI881471
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|149086608|gb|EE176151.2|EE176151
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|148944140|gb|EC889228.2|EC889228
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|148978929|gb|EE026387.2|EE026387
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|211085019|gb|FL286163.1|FL286163
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|78114933|gb|DV533321.1|DV533321
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|149071683|gb|EE160076.2|EE160076
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|149112482|gb|EE295354.2|EE295354
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|31349869|gb|CD434226.1|CD434226
EST:     GACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCCTTCATGGCAG                         GAATGGCACCTGAGGGTTCTCAGTTCGATGCTAAGCACTATGATTCTAAG
genomic: GACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG----C-T--T--CAGgtgttcgcct ... gtcatggcagGAATGGCACCTGAGGGTTCTCAGTTCGATGCTAAGCACTATGATTCTAAG
EST: gi|31363551|gb|CD447908.1|CD447908
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|211071319|gb|FL286089.1|FL286089
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|211076799|gb|FL286117.1|FL286117
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|31360434|gb|CD444791.1|CD444791
EST:     GACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCCGTCATGGCAG                         GAATGGCACCTGAGGGTTCTCAGTTCGATGCTAAGCACTATGATTCTAAG
genomic: GACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG----C-T--T--CAGgtgttcgcct ... gtcatggcagGAATGGCACCTGAGGGTTCTCAGTTCGATGCTAAGCACTATGATTCTAAG
EST: gi|149109326|gb|EE190140.2|EE190140
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|13382120|gb|BG458795.1|BG458795
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|211292606|gb|FL286213.1|FL286213
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|13125989|gb|BG316664.1|BG316664
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|211290463|gb|FL286196.1|FL286196
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|211288324|gb|FL286184.1|FL286184
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|211085017|gb|FL286161.1|FL286161
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|149075721|gb|EE164266.2|EE164266
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|211082283|gb|FL286152.1|FL286152
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|71768076|gb|DR966013.1|DR966013
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|148953344|gb|EE152835.2|EE152835
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|211288327|gb|FL286187.1|FL286187
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|211076806|gb|FL286124.1|FL286124
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|149023519|gb|EE045864.2|EE045864
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|29947480|gb|CB816678.1|CB816678
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|149097051|gb|EE182858.2|EE182858
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGTCATGGCAG                 
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCG---C--T--T--CAGgtgttcgcct ... gt
EST: gi|211319197|gb|FL039364.1|FL039364
EST:     AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAG                         GAATGGCACCTGAGGGTTCTCAGTTCGATGCTAAGCACTATGATTCTAAGA
genomic: AGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGgtgttcgcct ... gtcatggcagGAATGGCACCTGAGGGTTCTCAGTTCGATGCTAAGCACTATGATTCTAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCGCCGCCGAATCCGAGACTCCGATCTCGGGTTCACCGCAGCGCACAGAGCAGCCCCGACTCCCGGCCCGATCCGCGCTCTCCTCTCCGTCGCTTCAGgtgttcgcctcctccagatctcttgctgtctcgcttgttacttttttgtttgcttttcggcgtccgatctggtgcgacggcgggtctgggtccatctggc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC