1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGACGAGTGCTAAACAGATACCTGCATGAAAAACTTTTCAGGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcactatctttgttgatcttgtattcatttaaattttctattttggaattggaatacattacaattctgttgaagttcaatgttggttgttgttgaagttatggacctttaatgcatcttctcaattgtcaagttttttctatcacgttctattcatgcacttttcttgcattgttttcag
species | Zea mays |
transcript | GRMZM2G115948_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TATTGGAGTTGTCTATAG TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGCEST: gi|211323462|gb|FL273341.1|FL273341
genomic: TATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: GATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG TGGGATGGGTCCAGATTTCCGTGTTCTGGGTGGAGGAAAAAGTCGAAAGCAEST: gi|71445139|gb|DR826189.1|DR826189
genomic: GATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCT-GGT-GA-GAAAAAGTCGAAAGCA
EST: AAAGATTCAGGCACTAACACCTTAATATTGGAGTGGTCTATAG TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGCEST: gi|149076955|gb|EE165612.2|EE165612
genomic: AAAGATTCAGGCACTAACACC-TAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGCEST: gi|74232754|gb|DT640668.1|DT640668
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGCEST: gi|9951982|gb|BE638565.1|BE638565
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGGAAAAGTCGAAAGCAGGCEST: gi|78118765|gb|DV537149.1|DV537149
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG TGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcact ... ttgttttcagTGGGATGGGTCCAGATTTCCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGACGAGTGCTAAACAGATACCTGCATGAAAAACTTTTCAGGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAGgtactgcactatctttgttgatcttgtattcatttaaattttctattttggaattggaatacattacaattctgttgaagttcaatgttggttgttgttgaagttatggacctttaatgcatcttctcaattgtcaagttttttctatcacgttctattcatgcacttttcttgcattgttttcag
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