1 5' 3' | 2 5' 3' | 3 5' 3' |
GGAGCCGGCTTCCCTGGCACGCCGGTCCCGCGCTCGCCGGAGGACGTTTTCCGGGACTACCGCGCGCGCCAGGCCGGCCTAATCAGGGCGCTCACCACCGgtaatgcccgcatctccttcgcttgcgttactttctccctccggctcagagttctgtattgactagtttcccgctgtcgcttcagatgttgagaagttct...
species | Zea mays |
transcript | GRMZM2G115424_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGGGACTACCGCGCGCGCCAGGCCGGCCTAATCAGGGCGCTCACCACCG AGAAGGATAATTTATGTTTATATGGACTTCCCAATGAGACATGGGAAEST: gi|76018651|gb|DT945821.1|DT945821
genomic: CCGGGACTACCGCGCGCGCCAGGCCGGCCTAATCAGGGCGCTCACCACCGgtaatgcccg ... ttttgcgcagAGAAGGATAATTTATGTTTATATGGACTTCCCAATGAGACATGGGAA
EST: CCGGGACTACCGCGCGCGCCAGGCCGGCCTAATCAGGGCGCTCACCACCG AGAAGGATAATTTATGTTTATATGGACTTCCCAATGAGACATGGGAAGTAAEST: gi|17969981|gb|BM276750.1|BM276750
genomic: CCGGGACTACCGCGCGCGCCAGGCCGGCCTAATCAGGGCGCTCACCACCGgtaatgcccg ... ttttgcgcagAGAAGGATAATTTATGTTTATATGGACTTCCCAATGAGACATGGGAAGTAA
EST: CCGGGACTACCGCGCGCGCCAGGCCGGCCTAATCAGGGCGCTCACCACCG AGAAGGATAATTTATGTTTATATGGACTTCCCAATGAGACATGGGAAGTAAEST: gi|17970075|gb|BM276842.1|BM276842
genomic: CCGGGACTACCGCGCGCGCCAGGCCGGCCTAATCAGGGCGCTCACCACCGgtaatgcccg ... ttttgcgcagAGAAGGATAATTTATGTTTATATGGACTTCCCAATGAGACATGGGAAGTAA
EST: CCGGGACTACCGCGCGCGCCAGGCCGGCCTAATCAGGGCGCTCACCACCG AGAAGGATAATTTATGTTTATATGGACTTCCCAATGAGACATGGGAAGTAAEST: gi|19821822|gb|BQ047846.1|BQ047846
genomic: CCGGGACTACCGCGCGCGCCAGGCCGGCCTAATCAGGGCGCTCACCACCGgtaatgcccg ... ttttgcgcagAGAAGGATAATTTATGTTTATATGGACTTCCCAATGAGACATGGGAAGTAA
EST: CCGGGACTACCGCGCGCGCCAGGCCGGCCTAATCAGGGCGCTCACCACCG AGAAGGATAATTTATGTTTATATGGACTTCCCAATGAGACATGGGAAGTAAEST: gi|37418399|gb|CF646868.1|CF646868
genomic: CCGGGACTACCGCGCGCGCCAGGCCGGCCTAATCAGGGCGCTCACCACCGgtaatgcccg ... ttttgcgcagAGAAGGATAATTTATGTTTATATGGACTTCCCAATGAGACATGGGAAGTAA
EST: CCGGGACTACCGCGCGCGCCAGGCCGGCCTAATCAGGGCGCTCACCACCG AGAAGGATAATTTATGTTTATATGGACTTCCCAATGAGACATGGGAAGTAAEST: gi|18964760|gb|BM661194.1|BM661194
genomic: CCGGGACTACCGCGCGCGCCAGGCCGGCCTAATCAGGGCGCTCACCACCGgtaatgcccg ... ttttgcgcagAGAAGGATAATTTATGTTTATATGGACTTCCCAATGAGACATGGGAAGTAA
EST: CGGGACTACCTGCGCGCGCCAGGCCGGCCTAATCAGGGCGCTCACCACCG AGAAGGATAATTTATGTTTATATGGACTTCCCAATGAGACATGGGAAGTAAEST: gi|31353558|gb|CD437915.1|CD437915
genomic: CGGGACTACC-GCGCGCGCCAGGCCGGCCTAATCAGGGCGCTCACCACCGgtaatgcccg ... ttttgcgcagAGAAGGATAATTTATGTTTATATGGACTTCCCAATGAGACATGGGAAGTAA
EST: CCGGGACTACCGCGCGCGCCAGGACGGCCTAATCAGGGCGCTCACCACCG AGAAGGATAATTTATGTTTATATGGACTTCCCAATGAGACATGGGAAGTAA
genomic: CCGGGACTACCGCGCGCGCCAGGCCGGCCTAATCAGGGCGCTCACCACCGgtaatgcccg ... ttttgcgcagAGAAGGATAATTTATGTTTATATGGACTTCCCAATGAGACATGGGAAGTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGCCGGCTTCCCTGGCACGCCGGTCCCGCGCTCGCCGGAGGACGTTTTCCGGGACTACCGCGCGCGCCAGGCCGGCCTAATCAGGGCGCTCACCACCGgtaatgcccgcatctccttcgcttgcgttactttctccctccggctcagagttctgtattgactagtttcccgctgtcgcttcagatgttgagaagttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctcc