Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACATCCTCATTGTCTTCTTCTCCTGGCTCCTCGTCCTCTCCGTCTTCGGCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcctcttccgttccttcccaagtcccaagcctcccctcccgcctcgtatgtgcgtgcggggttcccatttgctgctgaattgtgaccctgggtg...

Basic information

species Zea mays
transcript GRMZM2G114911_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G114911_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g45180.1 (Oryza sativa), 5'ss of exon 1
CTACATCCTCATTGTCTTCTTCTCCTGGCTCCTCGTCCTCTCCGTCTTCGGCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcctcttccgttccttcccaagtcccaagcctcccctcccgcctcgt-atgtgcgt-gcggggttcccatttgctgctgaattgtgaccctgggtg
|||||||  |||  ||||||||||||||||||||||||||||||||||||||||||| || ||||  || |||||||||||||| ||||||||||||||||||| |  | |  || || |  | |     |||  | |  ||   | | |||| ||   ||| |   | ||      |||  ||      |  |  ||    
CTACATCTGCATCCTCTTCTTCTCCTGGCTCCTCGTCCTCTCCGTCTTCGGCTGCACGCCCGGCATGGCCTGGACCGTCGTCAATCTCTTCCACTTCGCGgtaatcctccccgcc-ttgcgccacgtcctccattcattaccattcccgtcgtcatcgtcgtcgtccgttttgtgagtgccactacgcgcttgctttgtaa-

upper sequence: GRMZM2G114911_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G05940.1 (Glycine max), 5'ss of exon 1
CTACATCCTCATTGTCTTCTTCTCCTGGCTCCTCGTCCTCTCCGTCTTCGGCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcctcttccgttccttcccaagtcccaagcctcccctcccgcc--tcgtatgtgcgtgcggggttcccatttgctgctgaattgtgaccctgggtg
 |||||||||||  | ||||| || ||| ||||||| |||||||||||||| ||| |||| |||| ||| |||||| |||| || |||   ||||| || ||| |   ||||| | | | ||      |  |     | |           | | |  || || | ||||  |  |    |  ||| |||      |||   
TTACATCCTCATCCTTTTCTTTTCTTGGATCCTCGTTCTCTCCGTCTTCGGTTGCTCCCCCGGCATCGCTTGGACCATCGTTAATCTCGCACACTTTGCTgtatctctctctttcttccttttaattatttcctttttacaaataaaaaaattgaaattgagttctgggtgtctttgattttttgatttggtgatttggt--

upper sequence: GRMZM2G114911_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA16G02540.1 (Glycine max), 5'ss of exon 1
CTACATCCTCATTGTCTTCTTCTCCTGGCTCCTCGTCCTCTCCGTCTTCGGCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcctcttccgttccttcccaagtcccaagcctcccctcccgcctcgtatgtgcgtgcgg-ggttcccatttgctgctgaattgtgaccctgggtg
 |||||||||||  | ||||| || ||| ||||||| |||||||||||||| ||  ||||||||| ||| |||||| |||| || |||   ||||| || ||| ||  || |  | || |||||        ||        |  |   |  ||            |  |   | ||   | ||  || |     | | | 
ATACATCCTCATCCTTTTCTTTTCTTGGATCCTCGTACTCTCCGTCTTCGGTTGTTCCCCTGGCATCGCTTGGACCATCGTTAATCTCGCACACTTTGCTgtatccttctatctc-ttgcttcctgtcatttaatttaattgttgccttttttaccaaaaaaaattgaatttgagttctgggtgtcttttatttgttgatt

upper sequence: GRMZM2G114911_T02 (Zea mays), 5'ss of exon 1
lower sequence: AT5G42000.2 (Arabidopsis thaliana), 5'ss of exon 1
CTACATCCTCATTGTCTTCTTCTCCTGGCTCCTCGTCCTCTCCGTCTTCGGCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcctct-tccgttccttcccaagtcccaagcctcc--cctcccgcctcgtatgtgcgtgcggggttcccatttgctgctgaattgtgaccctgggtg
 || || |||||  |||||||||| ||||||||||| ||||||||||||   ||  | ||||||| ||| |||||| | ||  | |||   || ||| | |||     | |  ||   |||   |||| | | ||          ||  |  | | || |  | |     ||    ||| ||                     
TTATATTCTCATCCTCTTCTTCTCTTGGCTCCTCGTTCTCTCCGTCTTCCATTGTTCTCCTGGCATCGCTTGGACCATTGTTCATCTCGCTCATTTCACCgtattattcccgatctcctccgatccaatttcgaaattgttggtttctagatttgaatttttgagtt---tttttgttttctag-------------------

upper sequence: GRMZM2G114911_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv15s0046g00140.t01 (Vitis vinifera), 5'ss of exon 1
CTACATCCTCATTGTCTTCTTCTCCTGGCTCCTCGTCCTCTCCGTCTTCGGCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgta-accgcct--cttccgttccttcccaagtcccaagcctcccctcccgcctcgtatgtgcgtgcggggttcccatttgctgctgaattgtgaccctgggtg
||||||||||||| |||||||| | |||||||| || |||||| ||||||||||| | |||||||  |||||||| |||||||| |||||||||||   ||||    |  |  |||  | |   || ||  |     |  |    |      | || | |  ||   |  |||   | || | | |   | |||   |     
CTACATCCTCATTCTCTTCTTCGCATGGCTCCTTGTTCTCTCCATCTTCGGCTGCTCTCCTGGCATGGCGTGGACAGTCGTCAATCTCTTCCACTTTTTGgtatgttgtttttcttttgatttctctcagattttgggttttttttttt-ttttgtttttttgttgagttttcaagtgtgtttcggttatttgatgatttt--

upper sequence: GRMZM2G114911_T02 (Zea mays), 5'ss of exon 1
lower sequence: PP1S123_9V6.1 (Physcomitrella patens), 5'ss of exon 1
CTACATCCTCATTGTCTTCTTCTCCTGGCTCCTCGTCCTCTCCGTCTTCGGCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaac-cgcctcttccgttccttcccaagtcccaagcctcccctcccgcctcgta---tgtgcgtgcggggttcccatttgctgctgaattgtgaccc-tgggtg
 || || || ||| |||| ||||| ||||||  | || ||||||  ||| | |||    | || ||||| ||||| |||||||||||| |||||||||| ||||| || ||| || ||| ||||    ||       ||    | | |    | |   |||  ||| |   |      | |  |     |||  |||| |  || 
GTATATTCTGATTATCTTGTTCTCGTGGCTCGCCATCGTCTCCGCGTTCCGATGCGATGCCGGAACCGCATGGACTGTCGTCAACCTCGTCCACTTCGCCgtaacgcgtctcctctgtttcttc----gttgtgtatctttgttgcggatggggagtttgtaggtgtgatttgagggatgggagtgcttttgctaccccttcgt-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71445807|gb|DR826857.1|DR826857
EST:     GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCG                         ATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
genomic: GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcct ... tatttttcagATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
EST: gi|211416728|gb|FL206619.1|FL206619
EST:     CTGCACCCCTGGCACCGCGTGGGACCGTCGTCAACCTCTTCCACTTCGCG                         ATCACATACCACTTT
genomic: CTGCACCCCTGGCACCGCGTGG-ACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcct ... tatttttcagATCACATACCACTTT
EST: gi|78082275|gb|DV510687.1|DV510687
EST:     GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCG                         ATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
genomic: GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcct ... tatttttcagATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
EST: gi|32907378|gb|CF012191.1|CF012191
EST:     GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCG                         ATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
genomic: GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcct ... tatttttcagATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
EST: gi|78081154|gb|DV509566.1|DV509566
EST:     GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCG                         ATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
genomic: GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcct ... tatttttcagATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
EST: gi|6681814|gb|AW287801.1|AW287801
EST:     GACCGTCGTCAACCTCTTCCACTTCGCG                         ATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
genomic: GACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcct ... tatttttcagATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
EST: gi|94474062|gb|EB703020.1|EB703020
EST:     GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTTCACTTCGCG                         ATCACTTACCACTTTTT
genomic: GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcct ... tatttttcagATCACATACCACTTTTT
EST: gi|211414178|gb|FL206607.1|FL206607
EST:     GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCG                         ATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
genomic: GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcct ... tatttttcagATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
EST: gi|78082274|gb|DV510686.1|DV510686
EST:     GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCG                         ATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
genomic: GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcct ... tatttttcagATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
EST: gi|211453252|gb|FL452574.1|FL452574
EST:     CGCGTGGACCGTCGTCAACCTCTTCCACTTCGCG                         ATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
genomic: CGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcct ... tatttttcagATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
EST: gi|78081153|gb|DV509565.1|DV509565
EST:     GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCG                         ATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
genomic: GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcct ... tatttttcagATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
EST: gi|71445808|gb|DR826858.1|DR826858
EST:     GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCG                         ATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
genomic: GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcct ... tatttttcagATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
EST: gi|211416727|gb|FL206618.1|FL206618
EST:     GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCG                         ATCACATACCACTTTTTCCA
genomic: GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcct ... tatttttcagATCACATACCACTTTTTCCA
EST: gi|211414185|gb|FL206614.1|FL206614
EST:     GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCG                         ATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
genomic: GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcct ... tatttttcagATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
EST: gi|32823856|gb|CD963578.1|CD963578
EST:     GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCG                         ATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
genomic: GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcct ... tatttttcagATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
EST: gi|60397481|gb|DN230297.1|DN230297
EST:     GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCG                         ATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
genomic: GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcct ... tatttttcagATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
EST: gi|211414180|gb|FL206609.1|FL206609
EST:     GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCG                         ATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
genomic: GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcct ... tatttttcagATCACATACCACTTTTTCCATTGGAAGAAAGGAACACCTTTTGCTGATGAC
EST: gi|211414177|gb|FL206606.1|FL206606
EST:     GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCG                         ATCACATACCACTTTTTCCATTGGAAGAA
genomic: GCTGCACCCCTGGCACCGCGTGGACCGTCGTCAACCTCTTCCACTTCGCGgtaaccgcct ... tatttttcagATCACATACCACTTTTTCCATTGGAAGAA