Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAACCAAGTTGGCTGAAGTCAAGGTCAGCCTCTAGGTCGTCAATTAAAAGCCAACGAGATTTCTCAGCATTTGATAACGAAGCAGCCGAGGGCTTACAGgttagttcatctgcttgaattcataaatgcatacacaagttttttcttttatctttctgcacaagtctgtctgttattcttttatcttcgctatatgccctaatatatatattttttgtacctgtcttgcag

Basic information

species Zea mays
transcript GRMZM2G114459_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G114459_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g45400.1 (Oryza sativa), 5'ss of exon 13
CAAACCAAGTTGGCTGAAGTCAAGGTCAGCCTCTAGGTCGTCAATTAAAAGCCAACGAGATTTCTCAGCATTTGATAACGAAGCAGCCGAGGGCTTACAGgttagttcatctgcttgaattcataaatgcatacacaagttttttctttta--tctttctgcacaagtctgtctgttattcttttatcttcgctatatgccctaatatatatattttttgtacctgtcttgcag
||||||||||||||||||||||| |||||  |||| |||| | | || ||  | | |||||||| | ||||||||||  |||||||| |||||||||||||| || |||  ||||| |||| ||||||||   |||  | ||||   |  |  |  |  |   |||       ||    |||   | |   | | | |   |   | ||      |  |  |  | | ||||||
CAAACCAAGTTGGCTGAAGTCAAAGTCAGTTTCTAAGTCGACCACTAGAACTCCAAGAGATTTCCCTGCATTTGATAGTGAAGCAGCTGAGGGCTTACAGgtcagatcaa-tgcttaaattaataaatgctgtcacttggttttcaataaaaatgataatcttcaatagaacttgcacctctgaaaccaatgttgttttttcacttctaa-----tgctaaatttcttttgcag