1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGACGCTACTCTACCCCAAGCTCATACTTAAGGACATGGACGACTCCACCCTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcgggacgcgattccctgtcccttcctcctcaaacccctcccatctctccgaatggatccgagttcggagaggtacacttggtagggatcgtaggt...
species | Zea mays |
transcript | GRMZM2G114172_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|116813073|gb|EC855467.1|EC855467
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACTATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|76021044|gb|DT948214.1|DT948214
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|211460046|gb|FL333662.1|FL333662
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTEST: gi|71428299|gb|DR809349.1|DR809349
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|211361683|gb|FL316886.1|FL316886
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAGAAATATTTTGTCGGCCAAGAAGATGATCCGGAGTTACEST: gi|78113538|gb|DV531929.1|DV531929
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTT-GTCGGCCAAGAAGATGATCCGGAGTTAC
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|6022603|gb|AW067415.1|AW067415
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACTATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|148958197|gb|EC904402.2|EC904402
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|101394403|gb|EB819136.1|EB819136
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|31405818|gb|CD484550.1|CD484550
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|211472060|gb|FL313866.1|FL313866
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGG-AAGATCAGCATGATCGG TACAATTKAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|211318594|gb|FL124207.1|FL124207
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|78109953|gb|DV528368.1|DV528368
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|211164210|gb|FL365736.1|FL365736
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACTEST: gi|211227127|gb|FL350907.1|FL350907
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAGAAATATTTGTCGGCCAAGAAGATGATCCGGAGTTACT
EST: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGG TACAATTGAAGAAG
genomic: CTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcggga ... taaatttcagTACAATTGAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACGCTACTCTACCCCAAGCTCATACTTAAGGACATGGACGACTCCACCCTCCTCTCCTCCATCCCTTTCAAGCCCAACGGGAAGATCAGCATGATCGGgtaagcgggacgcgattccctgtcccttcctcctcaaacccctcccatctctccgaatggatccgagttcggagaggtacacttggtagggatcgtaggt
- - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA