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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCTGCAAGACCCCCGCATCGCGGCCGTCGCCCCTGCCCTTATACGAGCCGCCGGCGCATCCGGCGTCGCACGCTTCGCTGTCAACGGCACCTCCGAGgtgcgccctccgctccatctacctcatcccagctccagggtcacgggcgtacatggtacatagctcgtcgctgactcttcccttaatcgacacgacacgtgcag

Basic information

species Zea mays
transcript GRMZM2G114131_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G114131_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g48820.2 (Oryza sativa), 5'ss of exon 1
CCACCTGCAAGACCCCCGCATCGCGGCCGTCGCCCCTGCCCTTATACGAGCCGCCGGCGCATCCGGCGTCGCACGCTTCGCTGTCAACGGCACCTCCGAGgtgcgccctccgctccatctacctcatcccagctccagggtcacgggcgtacatggtacatagctcgtcgctgactcttcccttaatcgacacgacacgtgcag
||||||||| ||||| ||  |   | ||||||||||| |||| ||||| ||||||  |||  |||||||||| |||||||| ||||||||||| ||||||||  || | |     |  ||||||| |                || |   ||  ||   ||  ||| ||||||||||||  || | | || | |   || ||||
CCACCTGCAGGACCCGCGTGTGCTGTCCGTCGCCCCTTCCCTCATACGCGCCGCCACCGCCGCCGGCGTCGCGCGCTTCGCCGTCAACGGCACTTCCGAGgtatgctcccg----cgcctacctcgt---------------gcgagaacacggggggaatctctcctcgctgactcttgtct-actggataag---cgcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37417816|gb|CF646568.1|CF646568
EST:     CCGCCGGCGCATCCGGCGTCGCACGCTTCGCTGTCAACGGCACCTCCGAG                         AAGGACTGGCACCTGGTGAAGCAGATGGCCGAGGATCACCCAGCCGTCGTC
genomic: CCGCCGGCGCATCCGGCGTCGCACGCTTCGCTGTCAACGGCACCTCCGAGgtgcgccctc ... acacgtgcagAAGGACTGGCACCTGGTGAAGCAGATGGCCGAGGATCACCCAGCCGTCGTC
EST: gi|50331796|gb|CO526922.1|CO526922
EST:     CCGCCGGCGCATCCGGCGTCGCACGCTTCGCTGTCAACGGCACCTCCGAG                         AAGGACTGGCACCTGGTGAAGCAGATGGCCGAGGATCACCCAGCCGTCGTC
genomic: CCGCCGGCGCATCCGGCGTCGCACGCTTCGCTGTCAACGGCACCTCCGAGgtgcgccctc ... acacgtgcagAAGGACTGGCACCTGGTGAAGCAGATGGCCGAGGATCACCCAGCCGTCGTC
EST: gi|211191074|gb|FL114971.1|FL114971
EST:     CCGCCGGCGCATCCGGCGTCGCACGCTTCGCTGTCAACGGCACCTCCGAG                         AAGGACTGGCACCTGGTGAAGCAGATGGCCGAGGATCACCCAGCCGTCGTC
genomic: CCGCCGGCGCATCCGGCGTCGCACGCTTCGCTGTCAACGGCACCTCCGAGgtgcgccctc ... acacgtgcagAAGGACTGGCACCTGGTGAAGCAGATGGCCGAGGATCACCCAGCCGTCGTC
EST: gi|148944968|gb|EC890138.2|EC890138
EST:     CCGCCGGCGCATCCGGCGTCGCACGCTTCGCTGTCAACGGCACCTCCGAG                         AAGGACTGGCACCTGGTGAAGCAGATGGCCGAGGATCACCCAGCCGTCGTC
genomic: CCGCCGGCGCATCCGGCGTCGCACGCTTCGCTGTCAACGGCACCTCCGAGgtgcgccctc ... acacgtgcagAAGGACTGGCACCTGGTGAAGCAGATGGCCGAGGATCACCCAGCCGTCGTC
EST: gi|78118988|gb|DV537372.1|DV537372
EST:     CCGCCGGCGCATCCGGCGTCGCACGCTTCGCTGTCAACGGCACCTCCGAG                         AAGGACTGGCACCTGGTGAAGCAGATGGCCGAGGATCACCCAGCCGTCGTC
genomic: CCGCCGGCGCATCCGGCGTCGCACGCTTCGCTGTCAACGGCACCTCCGAGgtgcgccctc ... acacgtgcagAAGGACTGGCACCTGGTGAAGCAGATGGCCGAGGATCACCCAGCCGTCGTC