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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTCGTGGCCTTCCTTTTCCGGCGGCCACAAGTGGGCGAGCGGCGGCGCCCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAGgtatgcccgccccttcgattccattctgctgtgcgaaacggagcaccccaaccccaacctaagctatttggtttcggatctgaccccaagtacgtttatt...

Basic information

species Zea mays
transcript GRMZM2G113619_T04
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78086642|gb|DV515035.1|DV515035
EST:     CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAG                         AAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
genomic: CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAGgtatgcccgc ... tattgggcagAAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
EST: gi|78089708|gb|DV518082.1|DV518082
EST:     CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAG                         AAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
genomic: CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAGgtatgcccgc ... tattgggcagAAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
EST: gi|76280760|gb|DV020328.1|DV020328
EST:     CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAG                         AAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
genomic: CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAGgtatgcccgc ... tattgggcagAAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
EST: gi|91053257|gb|EB163675.1|EB163675
EST:     CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAG                         AAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
genomic: CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAGgtatgcccgc ... tattgggcagAAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
EST: gi|71424785|gb|DR806435.1|DR806435
EST:     CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAG                         AAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
genomic: CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAGgtatgcccgc ... tattgggcagAAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
EST: gi|50325343|gb|CO520469.1|CO520469
EST:     CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAG                         AAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
genomic: CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAGgtatgcccgc ... tattgggcagAAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
EST: gi|91877839|gb|EB407796.1|EB407796
EST:     CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAG                         AAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
genomic: CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAGgtatgcccgc ... tattgggcagAAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
EST: gi|93283253|gb|EB675517.1|EB675517
EST:     CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAG                         AAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
genomic: CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAGgtatgcccgc ... tattgggcagAAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
EST: gi|78080128|gb|DV508540.1|DV508540
EST:     CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAG                         AAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
genomic: CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAGgtatgcccgc ... tattgggcagAAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
EST: gi|6827481|gb|AW331124.1|AW331124
EST:     CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAG                         AAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
genomic: CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAGgtatgcccgc ... tattgggcagAAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
EST: gi|37419826|gb|CF647598.1|CF647598
EST:     CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAG                         AAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
genomic: CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAGgtatgcccgc ... tattgggcagAAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
EST: gi|32919341|gb|CF024153.1|CF024153
EST:     CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAG                         AAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
genomic: CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAGgtatgcccgc ... tattgggcagAAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
EST: gi|91057080|gb|EB167498.1|EB167498
EST:     CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAG                         AAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
genomic: CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAGgtatgcccgc ... tattgggcagAAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
EST: gi|71766653|gb|DR964590.1|DR964590
EST:     CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAG                         AAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
genomic: CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAGgtatgcccgc ... tattgggcagAAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
EST: gi|71311806|gb|DR792364.1|DR792364
EST:     CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAG                         AAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
genomic: CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAGgtatgcccgc ... tattgggcagAAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
EST: gi|91049342|gb|EB159760.1|EB159760
EST:     CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAG                         AAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
genomic: CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAGgtatgcccgc ... tattgggcagAAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
EST: gi|76291932|gb|DV031500.1|DV031500
EST:     CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAG                         AAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC
genomic: CCTTCACCAGGTCTTCGTCGGGCCCTTCACCGGCGACGAGCATCCACCAGgtatgcccgc ... tattgggcagAAACGTGGAGCTCAGAGCATTGGTGCCTCTTTCCTCTTTCACCAAGGATTC