1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGCGCTGCCGCTCCTCTCATCCGCCTCCGCAGGCGGCTTCCCTCACGCCTCTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGGgtaagtccccctgatggcctgattctgtctctagcccaatgccgccctgacaccctgcggtcgtctgcggtgcttattctgttgcagcgggatgcagcgc...
species | Zea mays |
transcript | GRMZM2G113476_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGG GAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTGEST: gi|211301711|gb|FL094621.1|FL094621
genomic: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGGgtaagtcccc ... cctcttgcagGAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTG
EST: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGG GAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTGEST: gi|86472992|gb|DY239362.1|DY239362
genomic: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGGgtaagtcccc ... cctcttgcagGAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTG
EST: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGG AAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTG
genomic: CTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGGgtaagtcccc ... cctcttgcagGAATGCTCTCGAGCTGATGCTGCTGGAGCAGCTCCATTATCAAAGACACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGCTGCCGCTCCTCTCATCCGCCTCCGCAGGCGGCTTCCCTCACGCCTCTCGCGCTCCCTGCAGTGCCGCCCGCGAGCACCGCCGCGGCACCGTGCGGgtaagtccccctgatggcctgattctgtctctagcccaatgccgccctgacaccctgcggtcgtctgcggtgcttattctgttgcagcgggatgcagcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG