1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCCACACTCCCCAGAGGTTCTGAACGCAGATCTCTCGCCGCAGCTCGGCCTCGCGATTCCGCTGGAGACTGTTCAGCTCCTCGCCGGCGGCGCTGATTCGgtaccgcttcgcttcggcttgcgttcttgcactcctggtgcttattttggggaattttttttcacctgagtttgtgatgagcgcag
species | Zea mays |
transcript | GRMZM2G113453_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGCGATTCCGCTGGAGACTGTTCAGCTCCTCGCCGGCGGCGCTGATTCG ATCTGACGCCCACGCAGCAGAAGGCTGAAGGAGGGCWCTGGGAGCCGAGGGEST: gi|71765900|gb|DR963837.1|DR963837
genomic: TCGCGATTCCGCTGGAGACTGTTCAGCTCCTCGCCGGCGGCGCTGATTCGgtaccgcttc ... atgagcgcagATCTGACGCCCACGCAGCAGAAGGCTGAAGGAGGGCACTGGGAGCCGAGGG
EST: TCGCGATTCCGCTGGAGACTGTTCAGCTCCTCGCCGGCGGCGCTGATTCG ATCTGACGCCCACGCAGCAGAAGGCTGAAGGAGGGCACTGGGAGCCGAGGGEST: gi|149108986|gb|EE293082.2|EE293082
genomic: TCGCGATTCCGCTGGAGACTGTTCAGCTCCTCGCCGGCGGCGCTGATTCGgtaccgcttc ... atgagcgcagATCTGACGCCCACGCAGCAGAAGGCTGAAGGAGGGCACTGGGAGCCGAGGG
EST: TCGCGATTCCGCTGGAGACTGTTCAGCTCCTCGCCGGCGGCGCTGATTCG ATCTGACGCCCACGCAGCAGAAGGCTGAAGGAGGGCACTGGGAGCCGAGGGEST: gi|148973278|gb|EE024359.2|EE024359
genomic: TCGCGATTCCGCTGGAGACTGTTCAGCTCCTCGCCGGCGGCGCTGATTCGgtaccgcttc ... atgagcgcagATCTGACGCCCACGCAGCAGAAGGCTGAAGGAGGGCACTGGGAGCCGAGGG
EST: TCGCGATTCCGCTGGAGACTGTTCAGCTCCTCGCCGGCGGCGCTGATTCG ATCTGACGCCCACGCAGCAGAAGGCTGAAGGAGGGCACTGGGAGCCGAGGG
genomic: TCGCGATTCCGCTGGAGACTGTTCAGCTCCTCGCCGGCGGCGCTGATTCGgtaccgcttc ... atgagcgcagATCTGACGCCCACGCAGCAGAAGGCTGAAGGAGGGCACTGGGAGCCGAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCACACTCCCCAGAGGTTCTGAACGCAGATCTCTCGCCGCAGCTCGGCCTCGCGATTCCGCTGGAGACTGTTCAGCTCCTCGCCGGCGGCGCTGATTCGgtaccgcttcgcttcggcttgcgttcttgcactcctggtgcttattttggggaattttttttcacctgagtttgtgatgagcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT