1 5' 3' | 2 5' 3' | 3 5' 3' |
CGGCGGCGGCGGCCGACATGGCGGCTTCGGGAGGGCTCGAGCAGTGGCAGAAGGACGGGTTCTTCCAGGCGGCCGAGGAGGTGCAGGAGTCCGCGGACTTgtgagtgccttcgtcatcctggcttcgattcgttgcgccaggggcttcaaaacttttaactttatgtatatatatgcatgtctacctcttggcgattgtc...
species | Zea mays |
transcript | GRMZM2G112782_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAGGACGGGTTCTTCCAGGCGGCCGAGGAGGTGCAGGAGTCCGCGGACTT GATGGAATCAGTCTATAGAACTTGGATGCGTGAGCGTAGTAATGGATCTGGEST: gi|76287560|gb|DV027128.1|DV027128
genomic: AAGGACGGGTTCTTCCAGGCGGCCGAGGAGGTGCAGGAGTCCGCGGACTTgtgagtgcct ... ctccttgtagGATGGAATCAGTCTATAGAACTTGGATGCGTGAGCGTAGTAATGGATCTGG
EST: AAGGACGGGTTCTTCCAGGCGGCCGAGGAGGTGCAGGAGTCCGCGGACTT GATGGAATCAGTCTATAGAACTTGGATGCGTGAGCGTAGTAATGGATCTGGEST: gi|149070489|gb|EE158892.2|EE158892
genomic: AAGGACGGGTTCTTCCAGGCGGCCGAGGAGGTGCAGGAGTCCGCGGACTTgtgagtgcct ... ctccttgtagGATGGAATCAGTCTATAGAACTTGGATGCGTGAGCGTAGTAATGGATCTGG
EST: AAGGACGGGTTCTTCCAGGCGGCCGAGGAGGTGCAGGAGTCCGCGGACTT GATGGAATCAGTCTATAGAACTTGGATGCGTGAGCGTAGTAATGGATCTGGEST: gi|211046462|gb|FL097856.1|FL097856
genomic: AAGGACGGGTTCTTCCAGGCGGCCGAGGAGGTGCAGGAGTCCGCGGACTTgtgagtgcct ... ctccttgtagGATGGAATCAGTCTATAGAACTTGGATGCGTGAGCGTAGTAATGGATCTGG
EST: AAGGACGGGTTCTTCCAGGCGGCCGAGGAGGTGCAGGAGTCCGCGGACTT GATGGAATCAGTCTATAGAACTTGGATGCGTGAGCGTAGTAATGGATCTGGEST: gi|148931764|gb|EC875027.2|EC875027
genomic: AAGGACGGGTTCTTCCAGGCGGCCGAGGAGGTGCAGGAGTCCGCGGACTTgtgagtgcct ... ctccttgtagGATGGAATCAGTCTATAGAACTTGGATGCGTGAGCGTAGTAATGGATCTGG
EST: AAGGACGGGTTCTTCCAGGCGGCCGAGGAGGTGCAGGAGTCCGCGGACTT GATGGAATCAGTCTATAGAACTTGGATGCGTGAGCGTAGTAATGGATCTGGEST: gi|148932521|gb|EC876312.2|EC876312
genomic: AAGGACGGGTTCTTCCAGGCGGCCGAGGAGGTGCAGGAGTCCGCGGACTTgtgagtgcct ... ctccttgtagGATGGAATCAGTCTATAGAACTTGGATGCGTGAGCGTAGTAATGGATCTGG
EST: AAGGACGGGTTCTTCCAGGCGGCCGAGGAGGTGCAGGAGTCCGCGGACTT GATGGAATCAGTCTATAGAACTTGGATGCGTGAGCGTAGTAATGGATCTGGEST: gi|93016784|gb|EB642304.1|EB642304
genomic: AAGGACGGGTTCTTCCAGGCGGCCGAGGAGGTGCAGGAGTCCGCGGACTTgtgagtgcct ... ctccttgtagGATGGAATCAGTCTATAGAACTTGGATGCGTGAGCGTAGTAATGGATCTGG
EST: AAGGACGGGTTCTTCCAGGCGGCCGAGGAGGTGCAGGAGTCCGCGGACTT GATGGAATCAGTCTATAGAACTTGGATGCGTGAGCGTAGTAATGGATCTGGEST: gi|211046465|gb|FL097859.1|FL097859
genomic: AAGGACGGGTTCTTCCAGGCGGCCGAGGAGGTGCAGGAGTCCGCGGACTTgtgagtgcct ... ctccttgtagGATGGAATCAGTCTATAGAACTTGGATGCGTGAGCGTAGTAATGGATCTGG
EST: AAGGACGGGTTCTTCCAGGCGGCCGAGGAGGTGCAGGAGTCCGCGGACTT GATGGAATCAGTCTATAGAACTTGGATGCGTGAGCGTAGTAATGGATCTGG
genomic: AAGGACGGGTTCTTCCAGGCGGCCGAGGAGGTGCAGGAGTCCGCGGACTTgtgagtgcct ... ctccttgtagGATGGAATCAGTCTATAGAACTTGGATGCGTGAGCGTAGTAATGGATCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGGCGGCGGCCGACATGGCGGCTTCGGGAGGGCTCGAGCAGTGGCAGAAGGACGGGTTCTTCCAGGCGGCCGAGGAGGTGCAGGAGTCCGCGGACTTgtgagtgccttcgtcatcctggcttcgattcgttgcgccaggggcttcaaaacttttaactttatgtatatatatgcatgtctacctcttggcgattgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG