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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCGCGCTCCGTGAATCCCCTCGTGACTCGTGAGGGCTCGAGGCCCGACGGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctccgcgtggccatttcccccactcttcttgtggtgctcatctggtttcttggcgcattcttggtcaagcgatctcgtgccaaatgcgggctt...

Basic information

species Zea mays
transcript GRMZM2G112337_T04
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71771990|gb|DR969927.1|DR969927
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|148947544|gb|EC893017.2|EC893017
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|149100805|gb|EE186899.2|EE186899
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|88756751|gb|DY540892.1|DY540892
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|101402372|gb|EB822761.1|EB822761
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|149070598|gb|EE159003.2|EE159003
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|211163234|gb|FL071799.1|FL071799
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCGCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|71773222|gb|DR971131.1|DR971131
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|71448830|gb|DR829880.1|DR829880
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|211382995|gb|FL318290.1|FL318290
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCGCCGGCGCCGG-GGCCCGTAAG                         -CTGCTGAGTGAAAATGGGAGTKGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|76014764|gb|DT941934.1|DT941934
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|149098530|gb|EE184516.2|EE184516
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|89761743|gb|DY689636.1|DY689636
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|89763679|gb|DY690773.1|DY690773
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|76289491|gb|DV029059.1|DV029059
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|148930867|gb|EC873288.2|EC873288
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|149078382|gb|EE167157.2|EE167157
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|148985938|gb|EE029851.2|EE029851
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|148975390|gb|EE025689.2|EE025689
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|148959723|gb|EC905625.2|EC905625
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|71435945|gb|DR816995.1|DR816995
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|148999825|gb|EE036849.2|EE036849
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|149096273|gb|EE181983.2|EE181983
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|148964767|gb|EC906024.2|EC906024
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|149081898|gb|EE171059.2|EE171059
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|148995698|gb|EE034921.2|EE034921
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|149015047|gb|EE044793.2|EE044793
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|71324224|gb|DR798815.1|DR798815
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|71306091|gb|DR789195.1|DR789195
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|71438424|gb|DR819474.1|DR819474
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|149088741|gb|EE177865.2|EE177865
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCATTGTTAGGTG
EST: gi|148978442|gb|EE026170.2|EE026170
EST:     GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAG                         GCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCCCATTGTTAGGT
genomic: GGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctc ... ctccatgcagGCTGCTGAGTGAAAATGGGAGTGGCAGGTCACAACGATCC-ATTGTTAGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGCGCGCTCCGTGAATCCCCTCGTGACTCGTGAGGGCTCGAGGCCCGACGGGAGGACGAGGAGGCAAGAACCCTAGCCCCGGCGCCGGCGGCCCGTAAGgtgaggcctccgcgtggccatttcccccactcttcttgtggtgctcatctggtttcttggcgcattcttggtcaagcgatctcgtgccaaatgcgggctt

- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC