Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAAGGCGGAGGAGAGGATACCAGAATGGCGTCGCGAACGGCGTCCAAGGATATCATCGCTCTGCGAGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGgtacgcacgcgccgccctctccctccccctctactgattagttgcttgcacccatcgggagtttgacgaaatgcttccgttcgtatcggcag

Basic information

species Zea mays
transcript GRMZM2G112072_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G112072_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g40940.2 (Oryza sativa), 5'ss of exon 1
GAGGAAGGCGGAGGAGAGGATACCAGAATGGCGTCGCGAACGGCGTCCAAGGATATCATCGCTCTGCGAGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGgta------------cgcacgcgccgcc----ctctccctccccctctactgat----tagttgcttgcacccatcgggagtttgacgaaatgcttccgttcgtatcggcag
    |||  || |  | ||||      ||||||||| | |||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||            |||   ||   |      | |   || |||||  ||  |        |||  || |||    || ||||||   ||||| |    |||| | |||||
AGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGCGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGgtagaagccgatctccgcttccgtttcttttattttttttcgccctcggctcctctcacgcgtgcgcgcgcccgataggtgtttgatcgaatgccttttctcgtgt-ggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74241432|gb|DT649346.1|DT649346
EST:     GGATATCATCGCTCTGCGAGGCTCCGCCGCCATCGTCAGCGAGTTCTTCG                         GCTACGCGGCGAACAGGTACGCTACATCCTACAGTGTCCTGCAGGCTGCAG
genomic: GGATATCATCGCTCTGCGAGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGgtacgcacgc ... gtatcggcagGCTACGCGGCGAACAGGTACGCTACATCCTACAGTGTCCTGCAGGCTGCAG