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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGTGAGGCTGGGCGGCTCAGGCGTCGCGGTCACCAAGCTCGGCATCGGCGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATGgtacgtggcactcaccattcaccccctcctggctcctgctgcatgctcggcgtgttctcgttcccattctcgttcttgcttgctctcgggcgatcggaga...

Basic information

species Zea mays
transcript GRMZM2G111954_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G111954_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g04990.1 (Oryza sativa), 5'ss of exon 1
AAGGTGAGGCTGGGCGGCTCAGGCGTCGCGGTCACCAAGCTCGGCATCGGCGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATGgtacgtggcac-tcaccattcaccccctcctggctcctgctgcatgctcggcgtgttctcgttcccattc-tcgttcttgcttgctctcgggcgatcggaga-
|||||||||||||| || || |  || ||||| | |||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||     | |||  | |||  || ||     |  |   || || |  |  ||| || |     |||  |  || |||||   | | |  |  ||  |   
AAGGTGAGGCTGGGTGGGTCGGAAGTGGCGGTGAGCAAGCTCGGCATCGGCGCCTGGTCGTGGGGGGACACCACCTACTGGAACGACTCCGAGTGGGACGgtacgcactgcctcattaatcaatccatcg-aattgttcaagcttgttttgtttgtgctggaaaagattagttcttgttgctaattgttg--cagtcaaattt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76281356|gb|DV020924.1|DV020924
EST:     CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATG                         ACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
genomic: CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATGgtacgtggca ... gagttgccagACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
EST: gi|149077171|gb|EE165834.2|EE165834
EST:     CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATG                         ACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
genomic: CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATGgtacgtggca ... gagttgccagACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
EST: gi|148931921|gb|EC875135.2|EC875135
EST:     CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATG                         ACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
genomic: CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATGgtacgtggca ... gagttgccagACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
EST: gi|148935240|gb|EC879277.2|EC879277
EST:     CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATG                         ACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
genomic: CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATGgtacgtggca ... gagttgccagACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
EST: gi|149063769|gb|EE157636.2|EE157636
EST:     CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATG                         ACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
genomic: CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATGgtacgtggca ... gagttgccagACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
EST: gi|149013468|gb|EE042982.2|EE042982
EST:     CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATG                         ACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
genomic: CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATGgtacgtggca ... gagttgccagACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
EST: gi|148972626|gb|EE023587.2|EE023587
EST:     CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATG                         ACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
genomic: CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATGgtacgtggca ... gagttgccagACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
EST: gi|148982464|gb|EE028329.2|EE028329
EST:     CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATG                         ACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
genomic: CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATGgtacgtggca ... gagttgccagACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
EST: gi|148936271|gb|EC880349.2|EC880349
EST:     CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATG                         ACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
genomic: CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATGgtacgtggca ... gagttgccagACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
EST: gi|149111659|gb|EE190803.2|EE190803
EST:     CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATG                         ACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG
genomic: CGCGTGGTCCTGGGGCGACACCACCTACTGGAACGACTCCGAGTGGGATGgtacgtggca ... gagttgccagACAGGAGACTGAGGGAAGCACAGGACGCGTTCGATGCGAGCATCGATAACG