Sequence
atgc intronic sequence ATGC exonic sequenceGATGCTCCCTCCTTGTCCCGCCCGGGCAGCTCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACGCTGCTCAAGGTTCTTCCTCTGAACTAGGAgtaggtcgagaaggcaacatctcgtgtttttcactcccacttcattcgtgcaggcctgagaattgaaattggaactgaatttatgagactggtgattgcc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G111511_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g56400.1 (Oryza sativa), 5'ss of exon 1
--------------------GATGCTCCCTCCTTGTCCCGCCCGGGCAGCTCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACGCTGCTCAAGGTTCTT---CCTCTGAACTAGGAgtaggtcgagaaggcaacatc-tcgtgtttttcactcccacttcattcgtgcaggcctgagaattgaaattggaactgaatttatgagactggtgattgcc
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GGTGCTGCCGGTGCTCAAGGACTGCTCCCTCCGCGTCCCTCCGGGTCAGCTCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACCCTTCTCAAGgttcttcatcttctttacccccctgaactgaagagggcgtcgtccttgtgcttttcatgtgtattttgttcgtgc---cctgagcgtttttgctcatggagta---------------------
upper sequence: GRMZM2G111511_T04 (Zea mays), 5'ss of exon 1
lower sequence: EFJ05538 (Selaginella moellendorffii), 5'ss of exon 3
-------GATGCTCCCTCCTTGTCCCGCCCGGGCAGCTCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACGCTGCTCAAGGTTCTTCCTC----TGAACTAGGAgtag-gtcgagaaggcaacatctcgtgtttttcactcccacttcattcg--tgcaggcctgagaattgaaattggaactgaatttatgagactggtgattgcc
|| ||| | | |||||| || |||||||||||||||||||| ||||| || ||||| || || || |||||||||| || | | || | | || || | | || || | || | | || | | ||| |
CTCAAGAATTGTTCCATTCGAATCCCGCAAGGACAGCTCTGGATGCTCCTCGGGCCCAATGGATGCGGGAAATCGACACTGCTCAAGGCCAGTCTTTACGgtagcctttcactttcgtttgtgtaatgactctcctaactctttgcttgtgtcttgtttggctattttccagtgccttgcag--------------------------------
upper sequence: GRMZM2G111511_T04 (Zea mays), 5'ss of exon 1
lower sequence: EFJ25960 (Selaginella moellendorffii), 5'ss of exon 1
----------------GATGCTCCCTCCTTGTCCCGCCCGGGCAGCTCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACGCTGCTCAAGGTTCTTCCTC----TGAACTAGGAgtag-gtcgagaaggcaacatctcgtgtttttcactcccacttcattcg--tgcaggcctgagaattgaaattggaactgaatttatgagactggtgattgcc
|| ||| | | |||||| || |||||||||||||||||||| ||||| || ||||| || || || |||||||||| || | | || | | || || | | || || | || | | || | | ||| |
GTACCCGTGCTCAAGAATTGTTCCATTCGAATCCCGCAAGGACAGCTCTGGATGCTCCTCGGGCCCAATGGATGCGGGAAATCGACACTGCTCAAGGCCAgtctttacggtagcctttcactttcgtttgtgtaatgactctcctaactctttgcttgtgtcttgtttggctattttccagtgccttgcag--------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14242904|gb|BG840234.2|BG840234EST: AACGGCTGCGGCAAGTCCACGCTGCTCAAGGTTCTTCCTCTGAACTAGGA GTTTTAGCAGGTTTTCAGAATCCAACGGCCGGTACAGTGTATATAAACAGA
genomic: AACGGCTGCGGCAAGTCCACGCTGCTCAAGGTTCTTCCTCTGAACTAGGAgtaggtcgag ... tgttttttagGTTTTAGCAGGTTTTCAGAATCCAACGGCCGGTACAGTGTATATAAACAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGCTCCCTCCTTGTCCCGCCCGGGCAGCTCTGGATGCTCCTCGGCCCCAACGGCTGCGGCAAGTCCACGCTGCTCAAGGTTCTTCCTCTGAACTAGGAgtaggtcgagaaggcaacatctcgtgtttttcactcccacttcattcgtgcaggcctgagaattgaaattggaactgaatttatgagactggtgattgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actcccac