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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACTACCACCGCCGCCACAAGGTCTGCGAGTACCACGCCAAGGCCAGCGCCGTCGCCGCCGCCGGCAAGCAGCAGCGTTTCTGCCAGCAGTGCAGCAGgtacgtacgtacgtacgtgtccctccctcccctgcatgcgtgcatgcatgcatgcccggccctgggtcaggtggcccgcctgtcaagacacgtgcccact...

Basic information

species Zea mays
transcript GRMZM2G111136_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G111136_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g08070.1 (Oryza sativa), 5'ss of exon 1
AGCACTACCACCGCCGCCACAAGGTCTGCGAGTACCACGCCAAGGCCAGCGCCGTCGCCGCCGCCGGCAAGCAGCAGCGTTTCTGCCAGCAGTGCAGCAGgt-acgtacgtacgtacgtgtccctccctcccctgcatgcgtgcatgcatgcatgcccggccctgggtcaggtggcccgcctgtca-agacacgtgcccact
||||||||||||||||||||||||||||||| | |||||||||||||  |||||||  ||||||||||||||||||||| |||||||||||||||||||||| |  | ||  |   ||   || |  | |  |    || |  |  ||| |||  |  | | |||   |||||||  | |  | || || |||   | ||||
AGCACTACCACCGCCGCCACAAGGTCTGCGACTTCCACGCCAAGGCCGCCGCCGTCCTCGCCGCCGGCAAGCAGCAGCGCTTCTGCCAGCAGTGCAGCAGgttagctccgatcccgcgcaaccatgtcgctgccaggtgggacccagcaggcacacgtgtcgctg--ccaggtgggacccagggcacagccacacacgcact

upper sequence: GRMZM2G111136_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA03G27180.1 (Glycine max), 5'ss of exon 2
AGCACTACCACCGCCGCCACAAGGTCTGCGAGTACCACGCCAAGGCCAGCGCCGTCGCCGCCGCCGGCAAGCAGCAGCGTTTCTGCCAGCAGTGCAGCAGgtacgtacgtacgtacgtgtccctccctcccctgcatgcgtgcatgcatgcatgcccggccctgggtcaggtggcccgcctgtcaagacacgtgcccact--
||||||||||||||||||||||||| |||||||  ||| |||| |||  | |||||  |||||||||   |   ||||| ||||||||||| ||||||||||  ||     ||   || |   ||||  || |       |||||  ||   ||       ||   || || |||      |||    |||   || ||   
AGCACTACCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgt-tgtggtggcgcttgttttgttccccaccgtcgtgaattgcatcaatcattgagttcagctccctcggg-ggcatttgcgtcttttcacactcctacctt

upper sequence: GRMZM2G111136_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G14610.1 (Glycine max), 5'ss of exon 2
AGCACTACCACCGCCGCCACAAGGTCTGCGAGTACCACGCCAAGGCCAGCGCCGTCGCCGCCGCCGGCAAGCAGCAGCGTTTCTGCCAGCAGTGCAGCAGgt-acgtacgtacgtacgtgtccctccctcccctgcatgcgtgcatgcatgcatgcccggccctgggtcaggtggcccgcctgtcaagacacgtgcccact
||||||| ||||||||||||||||| |||||||  ||| |||| |||  | |||||  ||||||||||  |   ||||| ||||||||||| ||||||||||   |   || |     ||| |||| |   |    ||     ||  |||  |   | |  ||   |   |      || || |  | |||| | ||    
AGCACTATCACCGCCGCCACAAGGTGTGCGAGTTTCACTCCAAAGCCGCCACCGTCATCGCCGCCGGCTTGACTCAGCGATTCTGCCAGCAATGCAGCAGgttgtggtggtgctagtttgttcctcaccgtcggaaattgcatcaatcattgagttcagctccctcgggggcactttcgtctttttacacacctaccttt-

upper sequence: GRMZM2G111136_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv15s0021g02300.t01 (Vitis vinifera), 5'ss of exon 2
AGCACTACCACCGCCGCCACAAGGTCTGCGAGTACCACGCCAAGGCCAGCGCCGTCGCCGCCGCCGGCAAGCAGCAGCGTTTCTGCCAGCAGTGCAGCAGgtacgtacgtacgtacgtgtc--cctccctcccctgcatgcgtgcatgcatgcatgcccggccctgggtcaggtggcccgcctgtcaagacacgtgcccact
|||| |||||||||||||||||||||||||||| |||| |||| |||    | |||  |||||||||   |   ||||| |||||||| || || ||||||| |   |  |    |    |  |||   || |    |  | | ||   ||  |   |          | |  |   | ||    ||| |  |    | | |
AGCATTACCACCGCCGCCACAAGGTCTGCGAGTTCCACTCCAAAGCCTCTACAGTCTTCGCCGCCGGGTTGACTCAGCGCTTCTGCCAACAATGTAGCAGgttctcgcaaattaccaaaacacccttattcacaacgaaacttccagctattta-atctaataaaaaataaaatcaac-gcaaaccaaaattcaaagcaagt