1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCGCATGGGGCTGACGATATGCCGCACATGGGCATTCAGCGACGGTGGCCCCGGCGCGCTGCAGATCTCCCCAGGCCGGTTTAGCGAGCCTGTTTTCCAGgtgcggattgctccttcttcattcccttctcttcccacctacaaaagctattggaacggcgcaatttgttttgactgtcatctagagtagaaccggttcc...
species | Zea mays |
transcript | GRMZM2G110993_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGGCGCGCTGCAGATCTCCCCAGGCCGGTTTAGCGAGCCTGTTTTC-AG ATGCTGGATTATGTGATATACGAGTCCCGAAGAA-TCATGTTTAGATTGATEST: gi|148963195|gb|EE014172.2|EE014172
genomic: CCGGCGCGCTGCAGATCTCCCCAGGCCGGTTTAGCGAGCCTGTTTTCCAGgtgcggattg ... ttttgggtagATGCTGGATTATGTGATATACGAGTCCCGAAGAAATCATGTT-AGATTGAT
EST: CCGGCGCGCTGCAGATCTCCCCAGGCCGGTTTAGCGAGCCTGTTTTCCAG ATGCTGGATTATGTGATATACGAGTCCCGAAGAAATCATGTTAGATTGATC
genomic: CCGGCGCGCTGCAGATCTCCCCAGGCCGGTTTAGCGAGCCTGTTTTCCAGgtgcggattg ... ttttgggtagATGCTGGATTATGTGATATACGAGTCCCGAAGAAATCATGTTAGATTGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCATGGGGCTGACGATATGCCGCACATGGGCATTCAGCGACGGTGGCCCCGGCGCGCTGCAGATCTCCCCAGGCCGGTTTAGCGAGCCTGTTTTCCAGgtgcggattgctccttcttcattcccttctcttcccacctacaaaagctattggaacggcgcaatttgttttgactgtcatctagagtagaaccggttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacctac