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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGTCGTCGTCGTAAGCTGCAGCTAGTGTGGACTGGAGATCCACCACTCCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAGgtaaagctctgcaggatcctttctgcatatgattgattagtccgtatcgtcctagctgggatggatgccccgatccaccaattctgttgcggatttgttc...

Basic information

species Zea mays
transcript GRMZM2G110983_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32807434|gb|CD959668.1|CD959668
EST:     CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAG                         GAGCATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
genomic: CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAGgtaaagctct ... tgtcgtgcagGAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
EST: gi|32797239|gb|CD949475.1|CD949475
EST:     CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAG                         GAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
genomic: CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAGgtaaagctct ... tgtcgtgcagGAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
EST: gi|32799894|gb|CD952130.1|CD952130
EST:     CACACAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAG                         GAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
genomic: CAC-CAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAGgtaaagctct ... tgtcgtgcagGAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
EST: gi|15005418|gb|BI325485.1|BI325485
EST:     CATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAG                         GAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
genomic: CATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAGgtaaagctct ... tgtcgtgcagGAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
EST: gi|32807019|gb|CD959253.1|CD959253
EST:     CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAG                         GAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
genomic: CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAGgtaaagctct ... tgtcgtgcagGAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
EST: gi|211443180|gb|FL376062.1|FL376062
EST:     CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAG                         GAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
genomic: CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAGgtaaagctct ... tgtcgtgcagGAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
EST: gi|211206903|gb|FL385656.1|FL385656
EST:     CCACCAKTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAG                         GAACATCCGGGGATGTCGACTCCTGCSAGGAAGAGGCTGATGAGGGATTTC
genomic: CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAGgtaaagctct ... tgtcgtgcagGAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
EST: gi|32799116|gb|CD951352.1|CD951352
EST:     CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAG                         GAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
genomic: CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAGgtaaagctct ... tgtcgtgcagGAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
EST: gi|32798985|gb|CD951221.1|CD951221
EST:     CCACCAGTCCAGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAG                         GAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
genomic: CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAGgtaaagctct ... tgtcgtgcagGAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
EST: gi|32799638|gb|CD951874.1|CD951874
EST:     CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAG                         GAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
genomic: CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAGgtaaagctct ... tgtcgtgcagGAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
EST: gi|211312738|gb|FL018802.1|FL018802
EST:     CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAG                         GAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
genomic: CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAGgtaaagctct ... tgtcgtgcagGAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
EST: gi|32802786|gb|CD955022.1|CD955022
EST:     CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAG                         GAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
genomic: CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAGgtaaagctct ... tgtcgtgcagGAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
EST: gi|32809657|gb|CD961891.1|CD961891
EST:     CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAG                         GAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC
genomic: CCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAGgtaaagctct ... tgtcgtgcagGAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTGTCGTCGTCGTAAGCTGCAGCTAGTGTGGACTGGAGATCCACCACTCCACCAGTCCGGTCCATCTGCTGGACCTCGATTGGTTTCTTCTTACCTAGgtaaagctctgcaggatcctttctgcatatgattgattagtccgtatcgtcctagctgggatggatgccccgatccaccaattctgttgcggatttgttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA