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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTCTGACGACGACAAGCTTGTCGAGTACGACGCCCTGCTCCTCGACCGGTTCCTCGACATCCTACAGGACCTGCACGGCGAGGACATCAGGGAGACGgtatataaatgctccagttgattcctgcccgtggtgctatttgttcctttcttttcggtactggcaattggtttaggtggtagatagctcggtcatgctc...

Basic information

species Zea mays
transcript GRMZM2G110714_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110714_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g55350.1 (Oryza sativa), 5'ss of exon 2
GCTCTCTGACGACGACAAGCTTGTCGAGTACGACGCCCTGCTCCTCGACCGGTTCCTCGACATCCTACAGGACCTGCACGGCGAGGACATCAGGGAGACGgtatataaatgctccagttgattcctgcccgtggtgctatttgttcctttcttttcggtactggcaattggtttaggtggtagatagctcggtcatgctc------
|||||| || |||||||||||||| ||||||||||| ||||||||||| || |||||||||||||| ||||| ||||| || ||||||||||||||||||||| || | | | ||  | | | | ||||  |  |||  |||| |   | ||| |   |        ||| | | |||||  | |   |    |||||||      
GCTCTCGGAGGACGACAAGCTTGTGGAGTACGACGCGCTGCTCCTCGATCGCTTCCTCGACATCCTCCAGGATCTGCATGGGGAGGACATCAGGGAGACGgtaaatga-tcccccgatcgctccatgcc-ataatgcattttggtttctccttatttttctc--ttgttgatctgggtgg--ggtgagtactgcatgctcgaagat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32847783|gb|CD987464.1|CD987464
EST:     GGTTCCTCGACATCCTACAGGACCTGCACGGCGAGGACATCAGGGAGACG                         GTGCAAGAATGTTACGAGTTAGCTGCTGAGTATGAAAATAAGCTTGACCCC
genomic: GGTTCCTCGACATCCTACAGGACCTGCACGGCGAGGACATCAGGGAGACGgtatataaat ... ttgtgaatagGTGCAAGAATGTTACGAGTTAGCTGCTGAGTATGAAAATAAGCTTGACCCC