1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGCACCGGAGCGGCGGAGCCTGACGAGTCTACACAAGCGGTGGGGGGAGCAAAATCTGCGCCAGTTCGCCTCGCCTACTTATACACTCCGATCGCCCCCGgtagttactcgacttcgctccctttccctcctcccagctccggccccggctccggttctcacgcaggtgcgtgcggataacggttgcttgaatccagtcc...
species | Zea mays |
transcript | GRMZM2G110408_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAAATCTGCGCCAGTTCGCCTCGCCTACTTATACACTCCGATCGCCCCCG TAAGCAAAGATGGCACCACCATCCATGTGTCTTGCGGCAAAGGGGGTGCTTEST: gi|211488280|gb|FL067659.1|FL067659
genomic: AAAATCTGCGCCAGTTCGCCTCGCCTACTTATACACTCCGATCGCCCCCGgtagttactc ... tacttttcagTAAGCAAAGATGGCACCACCATCCATGTGTCTTGCGGCAAAGGGGGTGCTT
EST: AAAATCTGCGCCAGTTCGCCTCGCCTACTTATACACTCCGATCGCCCCCG TAAGCAAAGATGGCACCACCATCCATGTGTCTTGCGGCAAAGGGGGTGCTTEST: gi|16922886|gb|BM075878.1|BM075878
genomic: AAAATCTGCGCCAGTTCGCCTCGCCTACTTATACACTCCGATCGCCCCCGgtagttactc ... tacttttcagTAAGCAAAGATGGCACCACCATCCATGTGTCTTGCGGCAAAGGGGGTGCTT
EST: AAAATCTGCGCCAGTTCGCCTCGCCTACTTATACACTCCGATCGCCCCCG TAAGCAAAGATGGCACCACCATCCATGTGTCTTGCGGCAAAGGGGGTGCTTEST: gi|148945970|gb|EC891263.2|EC891263
genomic: AAAATCTGCGCCAGTTCGCCTCGCCTACTTATACACTCCGATCGCCCCCGgtagttactc ... tacttttcagTAAGCAAAGATGGCACCACCATCCATGTGTCTTGCGGCAAAGGGGGTGCTT
EST: AAAATCTGCGCCAGTTCGCCTCGCCTACTTATACACTCCGATCGCCCCCG TAAGCAAAGATGGCACCACCATCCATGTGTCTTGCGGCAAAGGGGGTGCTTEST: gi|93283958|gb|EB676222.1|EB676222
genomic: AAAATCTGCGCCAGTTCGCCTCGCCTACTTATACACTCCGATCGCCCCCGgtagttactc ... tacttttcagTAAGCAAAGATGGCACCACCATCCATGTGTCTTGCGGCAAAGGGGGTGCTT
EST: AAAATCTGCGCCAGTTCGCCTCGCCTACTTATACACTCCGATCGCCCCCG TAAGCAAAGATGGCACCACCATCCATGTGTCTTGCGGCAAAGGGGGTGCTT
genomic: AAAATCTGCGCCAGTTCGCCTCGCCTACTTATACACTCCGATCGCCCCCGgtagttactc ... tacttttcagTAAGCAAAGATGGCACCACCATCCATGTGTCTTGCGGCAAAGGGGGTGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCACCGGAGCGGCGGAGCCTGACGAGTCTACACAAGCGGTGGGGGGAGCAAAATCTGCGCCAGTTCGCCTCGCCTACTTATACACTCCGATCGCCCCCGgtagttactcgacttcgctccctttccctcctcccagctccggccccggctccggttctcacgcaggtgcgtgcggataacggttgcttgaatccagtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccggc