1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAGGAGGACAGCCATGGCGCCGGAGCCGGAGGATGATATTATGAACGAGAAGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTATgtgcgtgacacgatccccgtttggatctctcttatgatctcgtggatctagggttgtttggtgctttggtctcgggggcgggcctttggagctgtgttcg...
species | Zea mays |
transcript | GRMZM2G110185_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTAT GGACTGGGGCCGTATTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAGEST: gi|149015481|gb|EE045355.2|EE045355
genomic: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTATgtgcgtgaca ... gctgttgcagGGACTGGGGCCGTATTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAG
EST: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTAT GGACTGGGGCCGTATTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAGEST: gi|101395193|gb|EB819526.1|EB819526
genomic: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTATgtgcgtgaca ... gctgttgcagGGACTGGGGCCGTATTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAG
EST: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTAT GGACTGGGGCCGTATTCGACTGGCATTAAGAAGGTCGAGAAGGAGATCAAGEST: gi|149087114|gb|EE176653.2|EE176653
genomic: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTATgtgcgtgaca ... gctgttgcagGGACTGGGGCCGTATTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAG
EST: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTAT GGACTGGGGCCGTATTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAGEST: gi|211399660|gb|FL004434.1|FL004434
genomic: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTATgtgcgtgaca ... gctgttgcagGGACTGGGGCCGTATTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAG
EST: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTMCTCAAAACCTAT GGACTGGGGCCGTATTCGACCAGCATTAAGAAGGTCGAGAAGGAGATCAAGEST: gi|110209654|gb|EC891551.1|EC891551
genomic: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTATgtgcgtgaca ... gctgttgcagGGACTGGGGCCGTATTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAG
EST: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTAT GGACTGGGGCCGTATTCGACTAGCATTACGAAGGTCGAGAAGGAGATCAAGEST: gi|30087195|gb|CB885403.1|CB885403
genomic: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTATgtgcgtgaca ... gctgttgcagGGACTGGGGCCGTATTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAG
EST: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTAT GGACTGGGGCCGTATTCGACTAGCATTAAGAAGGTCGATTTTTAGATCNAGEST: gi|19437016|gb|BM953426.1|BM953426
genomic: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTATgtgcgtgaca ... gctgttgcagGGACTGGGGCCGTATTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAG
EST: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTAT GGACTGGGGCCGTATTCGACCAGCATTAAGAAGGTCGAGAAGGAGATCAAGEST: gi|211035074|gb|FL073374.1|FL073374
genomic: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTATgtgcgtgaca ... gctgttgcagGGACTGGGGCCGTATTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAG
EST: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTAT GGACTGGGGCCGTATTCGACCAGCATTAAGAAGGTCGAGAAGGAGATCAAGEST: gi|78085799|gb|DV514192.1|DV514192
genomic: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTATgtgcgtgaca ... gctgttgcagGGACTGGGGCCGTATTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAG
EST: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTAT GGACTGGGGCCGTATTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAGEST: gi|211010592|gb|FL355819.1|FL355819
genomic: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTATgtgcgtgaca ... gctgttgcagGGACTGGGGCCGTATTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAG
EST: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTAT AEST: gi|211010592|gb|FL355819.1|FL355819
genomic: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTATgtgcgtgaca ... gctgttgcag-
EST: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTAT AEST: gi|211283518|gb|FL004413.1|FL004413
genomic: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTATgtgcgtgaca ... gctgttgcag-
EST: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTAT GGACTGGGGCCGTATTCGACCAGCATTAAGAAGGTCGAGAAGGAGATCAAG
genomic: AGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTATgtgcgtgaca ... gctgttgcagGGACTGGGGCCGTATTCGACTAGCATTAAGAAGGTCGAGAAGGAGATCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGAGGACAGCCATGGCGCCGGAGCCGGAGGATGATATTATGAACGAGAAGAATCCCCGCCCGCTCGACGAGGATGACATCGCGCTCCTCAAAACCTATgtgcgtgacacgatccccgtttggatctctcttatgatctcgtggatctagggttgtttggtgctttggtctcgggggcgggcctttggagctgtgttcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC