1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCCGTCGTCGGAGGCGCCGCCGTGATGTCGCACTTTGGAAGGACGGGTCCGCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCCgtgagcgagacctaaccctagcccccgcccccttccctctgtctctaaccgcttccttctcatattcgtcttcaccctctgctcag
species | Zea mays |
transcript | GRMZM2G110143_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCC GAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGGGCAAGGGTEST: gi|211362372|gb|FL342933.1|FL342933
genomic: GCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCCgtgagcgaga ... ctctgctcagGAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGG-CAAGG-T
EST: GCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCC GAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGGCAAGGTCGEST: gi|211440859|gb|FL253848.1|FL253848
genomic: GCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCCgtgagcgaga ... ctctgctcagGAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGGCAAGGTCG
EST: GCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCC GAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGGCAAGGTCGEST: gi|211008119|gb|FL365557.1|FL365557
genomic: GCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCCgtgagcgaga ... ctctgctcagGAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGGCAAGGTCG
EST: GCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCC GAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGGCAAGGTCGEST: gi|211235451|gb|FL353173.1|FL353173
genomic: GCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCCgtgagcgaga ... ctctgctcagGAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGGCAAGGTCG
EST: GCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCYTCC GAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGGCAAGGTCGEST: gi|211161811|gb|FL316356.1|FL316356
genomic: GCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCCgtgagcgaga ... ctctgctcagGAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGGCAAGGTCG
EST: GCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCC GAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGGCAAGGTCGEST: gi|211470092|gb|FL331953.1|FL331953
genomic: GCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCCgtgagcgaga ... ctctgctcagGAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGGCAAGGTCG
EST: GCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCC GAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGGCAAGGTCGEST: gi|78105340|gb|DV523758.1|DV523758
genomic: GCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCCgtgagcgaga ... ctctgctcagGAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGGCAAGGTCG
EST: GCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCC GAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGGCAAGGTCGEST: gi|211440857|gb|FL253846.1|FL253846
genomic: GCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCCgtgagcgaga ... ctctgctcagGAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGGCAAGGTCG
EST: GCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCC GAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGGCAAGGTCG
genomic: GCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCCgtgagcgaga ... ctctgctcagGAACCACGGCCGACGACCTTTTCCCGCTCTTCGAGCGCTGCGGCAAGGTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGTCGTCGGAGGCGCCGCCGTGATGTCGCACTTTGGAAGGACGGGTCCGCCGGACATCCGCGACACCTTCTCGCTGCTCGTCCTCAACATCAGCTTCCgtgagcgagacctaaccctagcccccgcccccttccctctgtctctaaccgcttccttctcatattcgtcttcaccctctgctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT