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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGAGCGGCTCGGGGCGAGGGAGTGCGAGGACCTGGGGTTCACCGGCCTCGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAGgtacgcccggatcgtccctccggcgcgcgacaccacgcactcggtgcgctgctgctgagtgctgattggatttccgatctcaaccgggaacacgtagccg...

Basic information

species Zea mays
transcript GRMZM2G109429_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G109429_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g66960.1 (Oryza sativa), 5'ss of exon 1
GGCGAGCGGCTCGGGGCGAGGGAGTGCGAGGACCTGGGGTTCACCGGCCTCGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAGgtacgcccggatcgtccctccggcgcgcgacaccacgcactcggtgcgctgctgctgagtgctgattggatttccgatctcaaccgggaacacgtagccg----------------------
|  |||||| |||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||| | |||||||||||||||||||||| |   ||   || |||  ||      |  || |   |   ||  |||||||||           | |||| |||||| |||||||||| |||||  |                      
GCGGAGCGGTTCGGGGCGAGGGAGTGCGAGGAGCTGGGGTTCACCGGTCTCGCCCTCTGCTCCGACTGCAACGCCCTCGCGGAGTTCGTCAAGGACCAAGgtatg---ggg--gtacctgtgg------attcctcctcccatgta-gctgctgcta----------gtatttgcgatctgaaccgggaacgcgtaggagcctttcggatgcgttttttctt

upper sequence: GRMZM2G109429_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA02G15540.1 (Glycine max), 5'ss of exon 1
GGCGAGCGGCTCGGGGCGAGGGAGTGCGAGGACCTGGGGTTCACCGGCCTCGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAGgtacgc-ccggatcgtccctccggcgcgcgacaccacgcactcggtgcgctgctgctgagtgctgattggatttccgatctcaaccgggaacacgt----agccg--------------------------------------------------------------------------
|  || |  ||| |  |  | || |||||| | || || |||||||| |||||  | ||||||||||||||| | |||||||||| |||||||||| |||||     ||   |||   |||       |      | ||| |   |    | || |||  |  |  | |  ||  |  |  | |   | | ||||     |  ||                                                                          
GCGGAACAACTCAGTTCACGAGAATGCGAGAATCTCGGTTTCACCGGACTCGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattccatttcggatctcaattttccattcaaaagcattt--tttctttcttctg--tatttttcgatttcactgttactatgtgaagcacgactagaatcgaatataataggttagttagggtaccgtcacaattacgaagagtgttgtactaagcctcgaaatttcggttgcag

upper sequence: GRMZM2G109429_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G32960.2 (Glycine max), 5'ss of exon 1
GGCGAGCGGCTCGGGGCGAGGGAGTGCGAGGACCTGGGGTTCACCGGCCTCGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAGgtacgcccggatc---gtccctccggcgcgcg-acaccacgcactcggt-gcgctgctgctgagtgctgattggatttccgatctcaaccgggaacacgtagccg------------------------------------------------------------------------------------------
   ||||   |  |  |  | || |||||| | || || |||||||| |||||  | ||||||||||||||| | |||||||||| |||||||||| |||||     |   |     || |||   | | |  |||     || || |  ||  |  || |  || ||   ||  ||| |||| ||| | |  |  | || ||                                                                                            
TCGGAGCAATTAAGTTCACGAGAATGCGAGAATCTCGGTTTCACCGGACTCGCCTTGTGCTCCGACTGCAACACTCTCTCCGAGTACGTCAAGGACAAAGgtctattccatttcgaatctctctctctctcacacaattttcattcagaagcaattttgttttgttcta--tgccttttcgatttca-ctgttattatgtcgctcggagaagcgcgattagaatcgcgtttaggttagttaggttactgtctcaattacgaagagtgttgtactaagctcgaaattcggttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211452461|gb|FL410333.1|FL410333
EST:     CGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAG                         AGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA
genomic: CGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAGgtacgcccgg ... ttctgtgcagAGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA
EST: gi|211390309|gb|FL404115.1|FL404115
EST:     CGCCCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAG                         AGCTGGTGGAGGATTGCCGTAAATGTTGCACCGAGGATTCAGATGATTCTA
genomic: CGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAGgtacgcccgg ... ttctgtgcagAGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA
EST: gi|91056504|gb|EB166922.1|EB166922
EST:     CGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAG                         AGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA
genomic: CGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAGgtacgcccgg ... ttctgtgcagAGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA
EST: gi|211264276|gb|FL294960.1|FL294960
EST:     CGCCCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAG                         AGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA
genomic: CGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAGgtacgcccgg ... ttctgtgcagAGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA
EST: gi|211173040|gb|FL404342.1|FL404342
EST:     CGCCCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAG                         AGCTGGTGGAGGATTGCCGTAAATGTTGCACCGAGGATTCAGATGATTCTA
genomic: CGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAGgtacgcccgg ... ttctgtgcagAGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA
EST: gi|211425792|gb|FL370218.1|FL370218
EST:     CGCCCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAG                         AGCTGGTGGAGGATTGCCGTAAATKTTGCACCGAGGATTCAGATGATTCTA
genomic: CGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAGgtacgcccgg ... ttctgtgcagAGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA
EST: gi|13558509|gb|BG549865.1|BG549865
EST:     CGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAG                         AGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA
genomic: CGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAGgtacgcccgg ... ttctgtgcagAGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA
EST: gi|211108328|gb|FL388568.1|FL388568
EST:     CGCCCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAG                         AGCTGGTGGAGGATTGCCGTAAATGTTGCACCGAGGATTCAGATGATTCTA
genomic: CGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAGgtacgcccgg ... ttctgtgcagAGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA
EST: gi|211264271|gb|FL294955.1|FL294955
EST:     CGCCCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAG                         AGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA
genomic: CGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAGgtacgcccgg ... ttctgtgcagAGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA
EST: gi|211003072|gb|FL395292.1|FL395292
EST:     CGCCCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAG                         AGCTGGTGGAGGATTGCCGTAAATGTTGCACCGAGGATTCAGATGATTCTA
genomic: CGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAGgtacgcccgg ... ttctgtgcagAGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA
EST: gi|13558052|gb|BG549408.1|BG549408
EST:     CGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAG                         AGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA
genomic: CGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAGgtacgcccgg ... ttctgtgcagAGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA
EST: gi|211116346|gb|FL427489.1|FL427489
EST:     CGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAG                         AGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA
genomic: CGCTCTCTGCTCCGACTGCAACGCGCTCTCCGAGTTCGTCAAGGACCAAGgtacgcccgg ... ttctgtgcagAGCTGGTGGAGGATTGCCATAAATGTTGCACCGAGGATTCAGATGATTCTA